pyrimidine deoxyribonucleotides de novo biosynthesis I

Metabolites

1,10-Phenanthroline

Formula: C12H8N2 (180.0687448)

CAS ID: 66-71-7

Diphosphate

Formula: H4P2O7 (177.9432294)

CAS ID: 2466-09-3

H+

Formula: H (1.0078246)

CAS ID: 12408-02-5

H2O

Formula: H2O (18.0105642)

CAS ID: 7732-18-5

Magnesium cation

Formula: Mg (23.98505)

CAS ID: 22537-22-0

Mercaptoethanol

Formula: C2H6OS (78.0139346)

CAS ID: 60-24-2

Potassium cation

Formula: K (38.963708)

CAS ID: 24203-36-9

Sodium cation

Formula: Na (22.98977)

CAS ID: 17341-25-2

Zinc cation

Formula: Zn (63.929145)

CAS ID: 23713-49-7

ATP(4-)

Formula: C10H12N5O13P3 (502.9644492)

CAS ID:

UDP(3-)

Formula: C9H11N2O12P2 (400.9787246)

CAS ID: 86527-70-0

ADP(3-)

Formula: C10H12N5O10P2 (424.0059412)

CAS ID:

dTDP(3-)

Formula: C10H13N2O11P2 (398.9994588)

CAS ID:

dTMP(2-)

Formula: C10H13N2O8P (320.0409508)

CAS ID: 14057-65-9

dUDP(3-)

Formula: C9H11N2O11P2 (384.9838096)

CAS ID:



Enzyme

EC Number name full name note
3.6.1.-
1.17.4.1 ribonucleoside-diphosphate reductase 2'-deoxyribonucleoside-5'-diphosphate:thioredoxin-disulfide 2'-oxidoreductase
2.1.1.45 thymidylate synthase 5,10-methylenetetrahydrofolate:dUMP C-methyltransferase
2.7.4.3 adenylate kinase ATP:AMP phosphotransferase
2.7.4.6 nucleoside-diphosphate kinase ATP:nucleoside-diphosphate phosphotransferase
2.7.4.9 dTMP kinase ATP:dTMP phosphotransferase
3.6.1.12 dCTP diphosphatase dCTP nucleotidohydrolase
3.6.1.23 dUTP diphosphatase dUTP nucleotidohydrolase
3.6.1.9 nucleotide diphosphatase dinucleotide nucleotidohydrolase


Proteins

Protein ID name full name
P00452 nrdA Ribonucleoside-diphosphate reductase 1 subunit alpha
P06968 dut Deoxyuridine 5'-triphosphate nucleotidohydrolase
P0A720 tmk Thymidylate kinase
P0A763 ndk Nucleoside diphosphate kinase
P0A884 thyA Thymidylate synthase
P52006 nudI Nucleoside triphosphatase NudI
P69441 adk Adenylate kinase
P69924 nrdB Ribonucleoside-diphosphate reductase 1 subunit beta