dUDP(3-) (BioCAD00000477892)

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Metabolite Card

Formula: C9H11N2O11P2 (384.9838)
SMILES: O[C@H]1C[C@@H](O[C@@H]1COP([O-])(=O)OP([O-])([O-])=O)n1ccc(=O)[nH]c1=O

Synonyms [en]

2'-deoxy-5'-O-[(phosphonatooxy)phosphinato]uridine; dUDP trianion; 2'-deoxyuridine-5'-diphosphate; 2'-deoxyuridine 5'-diphosphate trianion; 2'-deoxyuridine 5'-diphosphate(3-); dUDP(3-)

Reviewed

Last reviewed on 2024-06-28.

Cite this Page

dUDP(3-). 数据之源，洞见之始. SMRUCC genomics institute, a synthetic life researcher from China. https://biocad_registry.innovation.ac.cn/s/(-)-arctiin (retrieved 2026-01-03) (CAD Registry RN: BioCAD00000477892). Licensed under the Attribution-Noncommercial 4.0 International License (CC BY-NC 4.0).

Note

A 2'-deoxyribonucleoside 5'-diphosphate obtained by deprotonation of the diphosphate OH groups of 2'-deoxyuridine 5'-diphosphate (dUDP)." []

Entity Information

DBLinks

  • CAS Registry Number:
  • PubChem CID: 25246037
  • ChEBI: 60471
  • HMDB:
  • LipidMaps:
  • KEGG:
  • BioCyc: DUDP
  • NCBI MeSH:
  • Wikipedia:
Other DBLinks
  • PubChem: 25246037
  • ChEBI: ChEBI:60471
  • BioCyc: DUDP

Class / Ontology

Metabolic Network
ID EC Number Name
BioCyc:UDPREDUCT-RXN 1.17.4.1 UDP + Red-Thioredoxin --> DUDP + Ox-Thioredoxin + WATER
BioCyc:DUDPKIN-RXN 2.7.4.6 DUDP + ATP --> DUTP + ADP
BioCyc:RXN0-722 1.17.4.1 UDP + Reduced-NrdH-Proteins --> DUDP + Oxidized-NrdH-Proteins + WATER
Rhea:RHEA:28027 1.17.4.1 dUDP + [thioredoxin]-disulfide + H2O => [thioredoxin]-dithiol + UDP
Rhea:RHEA:28028 1.17.4.1 [thioredoxin]-dithiol + UDP => dUDP + [thioredoxin]-disulfide + H2O
Rhea:RHEA:28029 1.17.4.1 dUDP + [thioredoxin]-disulfide + H2O <=> [thioredoxin]-dithiol + UDP
Rhea:RHEA:28583 2.7.4.6 dUDP + ATP => dUTP + ADP
Rhea:RHEA:28584 2.7.4.6 dUTP + ADP => dUDP + ATP
Rhea:RHEA:28585 2.7.4.6 dUDP + ATP <=> dUTP + ADP
Rhea:RHEA:30656 dUMP + ATP => dUDP + ADP
Rhea:RHEA:30657 dUDP + ADP => dUMP + ATP
Rhea:RHEA:30658 dUMP + ATP <=> dUDP + ADP
Rhea:RHEA:64969 dUTP + H2O => dUDP + phosphate + H+
Rhea:RHEA:64970 dUDP + phosphate + H+ => dUTP + H2O
Rhea:RHEA:64971 dUTP + H2O <=> dUDP + phosphate + H+
Rhea:RHEA:64973 dUDP + H2O => dUMP + phosphate + H+
Rhea:RHEA:64974 dUMP + phosphate + H+ => dUDP + H2O
Rhea:RHEA:64975 dUDP + H2O <=> dUMP + phosphate + H+
BioCyc:RXN-14220 DUDP + WATER<=>DUMP + Pi + PROTON
BioCyc:RXN-14122 2.7.4.13 ATP + DUMP --> ADP + DUDP
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Organism Source

Taxonomy Source

Pathway Synthetic

pathway id name
BioCyc:META_PWY-6545 pyrimidine deoxyribonucleotides de novo biosynthesis III
BioCyc:META_PWY-7211 superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis
BioCyc:ARA_PWY-7184 pyrimidine deoxyribonucleotides de novo biosynthesis I
BioCyc:VCHO_PWY-7184 pyrimidine deoxyribonucleotides de novo biosynthesis I
BioCyc:MTBH37RV_PWY-6545 pyrimidine deoxyribonucleotides de novo biosynthesis III
BioCyc:MTBCDC1551_PWY-7184 pyrimidine deoxyribonucleotides de novo biosynthesis I
BioCyc:HPY_PWY-7211 superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis
BioCyc:CAULO_PWY-7184 pyrimidine deoxyribonucleotides de novo biosynthesis I
BioCyc:AURANTIMONAS_PWY-7211 superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis
BioCyc:SCO_PWY-7184 pyrimidine deoxyribonucleotides de novo biosynthesis I
BioCyc:ECOL316407_PWY-7184 pyrimidine deoxyribonucleotides de novo biosynthesis I
BioCyc:PDIF272563_PWY-6545 pyrimidine deoxyribonucleotides de novo biosynthesis III
BioCyc:BTHE_PWY-7184 pyrimidine deoxyribonucleotides de novo biosynthesis I
BioCyc:GCF_000013425_PWY-7184 pyrimidine deoxyribonucleotides de novo biosynthesis I
BioCyc:HUMAN_PWY-7211 superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis
BioCyc:YEAST_PWY-7184 pyrimidine deoxyribonucleotides de novo biosynthesis I
BioCyc:ARA_PWY-7211 superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis
BioCyc:SHIGELLA_PWY-7184 pyrimidine deoxyribonucleotides de novo biosynthesis I
BioCyc:MTBH37RV_PWY-7211 superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis
BioCyc:MTBCDC1551_PWY-6545 pyrimidine deoxyribonucleotides de novo biosynthesis III
View All Pathways