superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis

Metabolites

CO2

Formula: CO2 (43.98983)

CAS ID: 124-38-9

Diphosphate

Formula: H4P2O7 (177.9432294)

CAS ID: 2466-09-3

H+

Formula: H (1.0078246)

CAS ID: 12408-02-5

H2O

Formula: H2O (18.0105642)

CAS ID: 7732-18-5

HCO3-

Formula: HCO3 (60.9925696)

CAS ID: 71-52-3

ATP(4-)

Formula: C10H12N5O13P3 (502.9644492)

CAS ID:

UDP(3-)

Formula: C9H11N2O12P2 (400.9787246)

CAS ID: 86527-70-0

ADP(3-)

Formula: C10H12N5O10P2 (424.0059412)

CAS ID:

dTDP(3-)

Formula: C10H13N2O11P2 (398.9994588)

CAS ID:

dTMP(2-)

Formula: C10H13N2O8P (320.0409508)

CAS ID: 14057-65-9

dUDP(3-)

Formula: C9H11N2O11P2 (384.9838096)

CAS ID:



Enzyme

EC Number name full name note
1.17.4.1 ribonucleoside-diphosphate reductase 2'-deoxyribonucleoside-5'-diphosphate:thioredoxin-disulfide 2'-oxidoreductase
2.1.1.45 thymidylate synthase 5,10-methylenetetrahydrofolate:dUMP C-methyltransferase
2.1.3.2 aspartate carbamoyltransferase carbamoyl-phosphate:L-aspartate carbamoyltransferase
2.7.4.22 UMP kinase ATP:UMP phosphotransferase
2.7.4.6 nucleoside-diphosphate kinase ATP:nucleoside-diphosphate phosphotransferase
3.6.1.23 dUTP diphosphatase dUTP nucleotidohydrolase
4.1.1.23 orotidine-5'-phosphate decarboxylase orotidine-5'-phosphate carboxy-lyase (UMP-forming)
6.3.4.16 carbamoyl-phosphate synthase (ammonia) carbon-dioxide:ammonia ligase (ADP-forming, carbamate-phosphorylating)
6.3.5.5 carbamoyl-phosphate synthase (glutamine-hydrolysing) hydrogen-carbonate:L-glutamine amido-ligase (ADP-forming, carbamate-phosphorylating)


Proteins

Protein ID name full name
P58638 pyrF Orotidine 5'-phosphate decarboxylase
Q8UDE9 carB Carbamoyl phosphate synthase large chain
Q8UDF7 carA Carbamoyl phosphate synthase small chain
Q8UDS3 thyA Thymidylate synthase
Q8UEM4 nrdJ Vitamin B12-dependent ribonucleotide reductase
Q8UFM1 pyrH Uridylate kinase
Q8UFT9 pyrB Aspartate carbamoyltransferase catalytic subunit
Q8UGB6 ndk Nucleoside diphosphate kinase
Q8UII1 dut Deoxyuridine 5'-triphosphate nucleotidohydrolase