Agrobacterium tumefaciens
ncbi_taxid: 358 - Agrobacterium tumefaciens(species); all_childs: 370, 371, 372, 176298, 176300, 190386, 260551, 1050720, 1082932, 1107544, 1183421, 1183422, 1183423, 1183424, 1183429, 1183430, 1281779, 1300224, 1300225, 1315272, 1368455, 1435057, 1453998, 1454226
taxonomy name: Agrobacterium tumefaciens (species)
ancestor: Agrobacterium tumefaciens complex (species group)
Child Taxonomy
| taxonomy name | rank | note |
|---|---|---|
| Agrobacterium tumefaciens (strain apple 185) | strain | ncbi_taxid: 370 - Agrobacterium tumefaciens (strain apple 185)(strain); all_childs: |
| Agrobacterium tumefaciens (strain B2A) | strain | ncbi_taxid: 371 - Agrobacterium tumefaciens (strain B2A)(strain); all_childs: |
| Agrobacterium tumefaciens (strain II CHRYS) | strain | ncbi_taxid: 372 - Agrobacterium tumefaciens (strain II CHRYS)(strain); all_childs: |
| Agrobacterium tumefaciens (strain Ach5) | strain | ncbi_taxid: 176298 - Agrobacterium tumefaciens (strain Ach5)(strain); all_childs: |
| Agrobacterium tumefaciens (strain T37) | strain | ncbi_taxid: 176300 - Agrobacterium tumefaciens (strain T37)(strain); all_childs: |
| Agrobacterium tumefaciens (strain 15955) | strain | ncbi_taxid: 190386 - Agrobacterium tumefaciens (strain 15955)(strain); all_childs: |
| Agrobacterium tumefaciens (strain RS5) | strain | ncbi_taxid: 260551 - Agrobacterium tumefaciens (strain RS5)(strain); all_childs: |
| Agrobacterium tumefaciens F2 | strain | ncbi_taxid: 1050720 - Agrobacterium tumefaciens F2(strain); all_childs: |
| Agrobacterium tumefaciens CCNWGS0286 | strain | ncbi_taxid: 1082932 - Agrobacterium tumefaciens CCNWGS0286(strain); all_childs: |
| Agrobacterium tumefaciens 5A | strain | ncbi_taxid: 1107544 - Agrobacterium tumefaciens 5A(strain); all_childs: |
| Agrobacterium fabacearum CFBP 5771 | strain | ncbi_taxid: 1183421 - Agrobacterium fabacearum CFBP 5771(strain); all_childs: |
| Agrobacterium tumefaciens str. CFBP 5621 | strain | ncbi_taxid: 1183422 - Agrobacterium tumefaciens str. CFBP 5621(strain); all_childs: |
| Agrobacterium tumefaciens str. B6 | strain | ncbi_taxid: 1183423 - Agrobacterium tumefaciens str. B6(strain); all_childs: |
| Agrobacterium tumefaciens str. Kerr 14 | strain | ncbi_taxid: 1183424 - Agrobacterium tumefaciens str. Kerr 14(strain); all_childs: |
| Agrobacterium fabacearum S56 | strain | ncbi_taxid: 1183429 - Agrobacterium fabacearum S56(strain); all_childs: |
| Agrobacterium fabacearum TT111 | strain | ncbi_taxid: 1183430 - Agrobacterium fabacearum TT111(strain); all_childs: |
| Agrobacterium tumefaciens str. Cherry 2E-2-2 | strain | ncbi_taxid: 1281779 - Agrobacterium tumefaciens str. Cherry 2E-2-2(strain); all_childs: |
| Agrobacterium fabacearum P4 | strain | ncbi_taxid: 1300224 - Agrobacterium fabacearum P4(strain); all_childs: |
| Agrobacterium tumefaciens WRT31 | strain | ncbi_taxid: 1300225 - Agrobacterium tumefaciens WRT31(strain); all_childs: |
| Agrobacterium tumefaciens GW4 | strain | ncbi_taxid: 1315272 - Agrobacterium tumefaciens GW4(strain); all_childs: |
| Agrobacterium fabacearum str. Foundi | strain | ncbi_taxid: 1368455 - Agrobacterium fabacearum str. Foundi(strain); all_childs: |
| Agrobacterium tumefaciens LBA4213 (Ach5) | strain | ncbi_taxid: 1435057 - Agrobacterium tumefaciens LBA4213 (Ach5)(strain); all_childs: |
| Agrobacterium tumefaciens A6 | strain | ncbi_taxid: 1453998 - Agrobacterium tumefaciens A6(strain); all_childs: |
| Agrobacterium tumefaciens S2 | strain | ncbi_taxid: 1454226 - Agrobacterium tumefaciens S2(strain); all_childs: |
Enzyme Proteins
| protein id | name | ec_number | function |
|---|---|---|---|
| Q9AHF0 [UniProt] | acdS | 3.5.99.7 | 1-aminocyclopropane-1-carboxylate deaminase |
| Q8VPD5 [UniProt] | attM | 3.1.1.81 | N-acyl homoserine lactonase AttM |
| Q9AHE8 [UniProt] | amdA | 3.5.1.75 | Urethanase |
| P30812 [UniProt] | lacZ | 3.2.1.23 | Beta-galactosidase |
| P27034 [UniProt] | cbg-1 | 3.2.1.21 | Beta-glucosidase |
| P24466 [UniProt] | cyp103 | 1.14.-.- | Cytochrome P450-pinF1, plant-inducible |
| P24467 [UniProt] | cyp104 | 1.14.-.- | Cytochrome P450-pinF2, plant-inducible |
| Q44185 [UniProt] | DCAS_RHIRD | 3.5.1.77 | N-carbamoyl-D-amino acid hydrolase |
| P75022 [UniProt] | tufA | 3.6.5.3 | Elongation factor Tu |
| P0A3F3 [UniProt] | glgA1 | 2.4.1.21 | Glycogen synthase 1 |
| P52979 [UniProt] | glgB | 2.4.1.18 | 1,4-alpha-glucan branching enzyme GlgB |
| P39669 [UniProt] | glgC | 2.7.7.27 | Glucose-1-phosphate adenylyltransferase |
| Q60FX6 [UniProt] | rdc | 4.1.1.103 | Gamma-resorcylate decarboxylase |
| P26505 [UniProt] | hemA | 2.3.1.37 | 5-aminolevulinate synthase |
| Q8VPZ0 [UniProt] | hppA | 7.2.3.1 | Putative K(+)-stimulated pyrophosphate-energized sodium pump |
| Q44184 [UniProt] | hyuA | 3.5.2.- | D-hydantoinase |
| P0A2X0 [UniProt] | tms2 | 3.5.1.- | Indoleacetamide hydrolase |
| P15653 [UniProt] | ipt | 2.5.1.27 | Adenylate dimethylallyltransferase |
| Q9R708 [UniProt] | katG | 1.11.1.21 | Catalase-peroxidase |
| P61605 [UniProt] | lexA | 3.4.21.88 | LexA repressor |
| P0A3Q6 [UniProt] | miaA | 2.5.1.75 | tRNA dimethylallyltransferase |
| P0A2V1 [UniProt] | ndvA | 7.5.2.3 | Beta-(1-->2)glucan export ATP-binding/permease protein NdvA |
| P27644 [UniProt] | pgl | 3.2.1.15 | Polygalacturonase |
| P39671 [UniProt] | pgm | 5.4.2.2 | Phosphoglucomutase |
| P0A4E4 [UniProt] | rpoA | 2.7.7.6 | DNA-directed RNA polymerase subunit alpha |
| P14511 [UniProt] | S3AD_RHIRD | 2.7.7.47 | Aminoglycoside (3'') (9) adenylyltransferase |
| Q9KWN1 [UniProt] | sdh | 1.1.1.276 | Serine 3-dehydrogenase |
| A6XIG7 [UniProt] | SLMH_RHIRD | 3.1.1.92 | 4-sulfomuconolactone hydrolase |
| P0A3V3 [UniProt] | tms1 | 1.13.12.3 | Tryptophan 2-monooxygenase |
| P33904 [UniProt] | traI | 2.3.1.184 | Acyl-homoserine-lactone synthase |
| P07167 [UniProt] | virA | 2.7.13.3 | Limited host range VirA protein |
| P07168 [UniProt] | virA | 2.7.13.3 | Wide host range VirA protein |
| P06667 [UniProt] | virD1 | 3.1.-.- | T-DNA border endonuclease VirD1 |
| P06668 [UniProt] | virD2 | 3.1.-.- | T-DNA border endonuclease VirD2 |
Metabolites
LCMS Annotations
Literature Annotations
| Metabolite | Database Reference | Structure |
|---|---|---|
| Sucrose Formula: C12H22O11 Exact Mass: 342.1162 Source ID: CNP0208561.1 |
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| (-)-Epicatechin Formula: C15H14O6 Exact Mass: 290.079 Source ID: CNP0293352.2 |
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| (+)-Catechin Formula: C15H14O6 Exact Mass: 290.079 Source ID: CNP0293352.3 |
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| Fisetin Formula: C15H10O6 Exact Mass: 286.0477 Source ID: CNP0276366.0 |
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| cis-Zeatin Formula: C10H13N5O Exact Mass: 219.112 Source ID: CNP0606602.0 |
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| Taxifolin Formula: C15H12O7 Exact Mass: 304.0583 Source ID: CNP0268073.2 |
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| Robinetin Formula: C15H10O7 Exact Mass: 302.0427 Source ID: CNP0163085.0 |
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| Syringic acid Formula: C9H10O5 Exact Mass: 198.0528 Source ID: CNP0155116.0 |
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| Isobavachromene Formula: C20H18O4 Exact Mass: 322.1205 Source ID: CNP0333285.0 |
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| Butin Formula: C15H12O5 Exact Mass: 272.0685 Source ID: CNP0170493.1 |
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| (+)-Gallocatechin Formula: C15H14O7 Exact Mass: 306.0739 Source ID: CNP0162539.4 |
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| Carpachromene Formula: C20H16O5 Exact Mass: 336.0998 Source ID: CNP0142883.0 |
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Formula: C45H38O16 Exact Mass: 834.216 Source ID: CNP0255184.1 |
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Formula: C81H84O25 Exact Mass: 1456.5301 Source ID: CNP0199395.1 |
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Formula: C30H26O13 Exact Mass: 594.1373 Source ID: CNP0275321.1 |
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Formula: C81H84O25 Exact Mass: 1456.5301 Source ID: CNP0199395.2 |
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Formula: C43H48O15 Exact Mass: 804.2993 Source ID: CNP0312790.1 |
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| robinetinidol-(4alpha,8)-catechin Formula: C30H26O12 Exact Mass: 578.1424 Source ID: CNP0261864.1 |
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| FISETINIDOL-(4A8)-CATECHIN Formula: C30H26O11 Exact Mass: 562.1475 Source ID: CNP0227541.1 |
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| Fisetin tetramethyl ether Formula: C19H18O6 Exact Mass: 342.1103 Source ID: CNP0154400.0 |
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Formula: C22H16O9 Exact Mass: 424.0794 Source ID: CNP0330227.1 |
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| 2-methylthio-N(6)-(Delta(2)-isopentenyl)adenosine Formula: C16H23N5O4S Exact Mass: 381.1471 Source ID: CNP0200947.1 |
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| 4'-O-methylrobinetinidol 3'-O-beta-D-glucopyranoside Formula: C22H26O11 Exact Mass: 466.1475 Source ID: CNP0303350.1 |
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| 3beta,4beta,5-Trimethoxy-4'-hydroxy- (6:7)-2,2-dimethylpyranoflavan Formula: C23H26O6 Exact Mass: 398.1729 Source ID: CNP0251566.1 |
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Formula: C43H48O15 Exact Mass: 804.2993 Source ID: CNP0156757.1 |
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| fisetinidol-(4alpha,6)-gallocatechin Formula: C30H26O12 Exact Mass: 578.1424 Source ID: CNP0194656.1 |
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Formula: C11H16O6S Exact Mass: 276.0668 Source ID: CNP0464319.1 |
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Formula: C81H84O25 Exact Mass: 1456.5301 Source ID: CNP0199395.3 |
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Formula: C63H68O21 Exact Mass: 1160.4253 Source ID: CNP0189513.1 |
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| robinetinidol-(4alpha,8)-gallocatechin Formula: C30H26O13 Exact Mass: 594.1373 Source ID: CNP0275321.2 |
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| Fisetin 3-methyl ether Formula: C16H12O6 Exact Mass: 300.0634 Source ID: CNP0199979.0 |
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| 1-O,6-O-Digalloyl-beta-D-glucose Formula: C20H20O14 Exact Mass: 484.0853 Source ID: CNP0411484.2 |
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Formula: C22H24O5 Exact Mass: 368.1624 Source ID: CNP0254269.1 |
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Formula: C30H26O11 Exact Mass: 562.1475 Source ID: CNP0280090.1 |
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| 5-Hydroxy-8-(4-hydroxy-3-methoxyphenyl)-2,2-dimethyl-2H,6H-benzo[1,2-b:5,4-b']dipyran-6-one Formula: C21H18O6 Exact Mass: 366.1103 Source ID: CNP0303178.0 |
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Formula: C16H14O5 Exact Mass: 286.0841 Source ID: CNP0202198.0 |
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Formula: C45H38O16 Exact Mass: 834.216 Source ID: CNP0289228.1 |
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Formula: C42H46O14 Exact Mass: 774.2887 Source ID: CNP0261801.1 |
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Formula: C30H24O12 Exact Mass: 576.1268 Source ID: CNP0161011.1 |
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Formula: C36H36O10 Exact Mass: 628.2308 Source ID: CNP0364294.1 |
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Formula: C45H38O16 Exact Mass: 834.216 Source ID: CNP0289228.2 |
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Formula: C31H28O11 Exact Mass: 576.1632 Source ID: CNP0288113.1 |
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Formula: C22H24O4 Exact Mass: 352.1675 Source ID: CNP0212205.1 |
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| Glychalcone A Formula: C22H22O5 Exact Mass: 366.1467 Source ID: CNP0200830.0 |
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Formula: C11H16O10S2 Exact Mass: 372.0185 Source ID: CNP0436875.1 |
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| Isocordoin Formula: C20H20O3 Exact Mass: 308.1412 Source ID: CNP0327128.0 |
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| Carpachromene dimethyl ether Formula: C22H20O5 Exact Mass: 364.1311 Source ID: CNP0137817.0 |
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| epirobinetinidol-(4beta,8)-catechin Formula: C30H26O12 Exact Mass: 578.1424 Source ID: CNP0261864.2 |
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| 5-[(2R,3R)-3,7-dihydroxy-3,4-dihydro-2H-1-benzopyran-2-yl]benzene-1,2,3-triol Formula: C15H14O6 Exact Mass: 290.079 Source ID: CNP0286093.1 |
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Formula: C23H26O4 Exact Mass: 366.1831 Source ID: CNP0116315.1 |
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Formula: C42H46O14 Exact Mass: 774.2887 Source ID: CNP0184674.1 |
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Formula: C23H26O5 Exact Mass: 382.178 Source ID: CNP0157609.1 |
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| ent-Epifisetinidol-4beta-ol Formula: C15H14O6 Exact Mass: 290.079 Source ID: CNP0132968.1 |
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| Fisetinidol-4alpha-ol Formula: C15H14O6 Exact Mass: 290.079 Source ID: CNP0132968.2 |
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| multifidol glucoside Formula: C17H24O9 Exact Mass: 372.142 Source ID: CNP0146328.2 |
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Formula: C45H38O16 Exact Mass: 834.216 Source ID: CNP0289228.3 |
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| fisetinidol-(4alpha,8)-catechin Formula: C30H26O11 Exact Mass: 562.1475 Source ID: CNP0227541.2 |
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Formula: C43H48O15 Exact Mass: 804.2993 Source ID: CNP0317292.1 |
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Formula: C63H68O21 Exact Mass: 1160.4253 Source ID: CNP0311931.1 |
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Formula: C11H14O6S Exact Mass: 274.0511 Source ID: CNP0445997.1 |
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Formula: C30H26O11 Exact Mass: 562.1475 Source ID: CNP0280090.2 |
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Formula: C30H26O11 Exact Mass: 562.1475 Source ID: CNP0280090.3 |
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| densiflorol B Formula: C15H10O4 Exact Mass: 254.0579 Source ID: CNP0246901.0 |
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| Tachioside Formula: C13H18O8 Exact Mass: 302.1002 Source ID: CNP0280309.1 |
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| Garbanzol Formula: C15H12O5 Exact Mass: 272.0685 Source ID: CNP0143264.1 |
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Formula: C10H18O9 Exact Mass: 282.0951 Source ID: CNP0250193.1 |
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Formula: C11H16O9S2 Exact Mass: 356.0236 Source ID: CNP0473873.1 |
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| Robinetinidol Formula: C15H14O6 Exact Mass: 290.079 Source ID: CNP0286093.2 |
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Formula: C64H70O22 Exact Mass: 1190.4359 Source ID: CNP0273815.1 |
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| [(2R,3S,8S,9S,10R)-9-acetyloxy-10-(2,4-dimethoxyphenyl)-5-methoxy-8-(3,4,5-trimethoxyphenyl)-2-(3,4-dimethoxyphenyl)-2,3,4,8,9,10-hexahydropyrano[2,3-h]chromen-3-yl] acetate Formula: C42H46O14 Exact Mass: 774.2887 Source ID: CNP0261801.2 |
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Formula: C42H46O14 Exact Mass: 774.2887 Source ID: CNP0261801.3 |
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Formula: C81H84O25 Exact Mass: 1456.5301 Source ID: CNP0199395.4 |
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Formula: C63H68O21 Exact Mass: 1160.4253 Source ID: CNP0189513.2 |
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| (2S)-5,7-dihydroxy-6,8-bis(3-methylbut-2-en-1-yl)-2-phenyl-3,4-dihydro-2H-1-benzopyran-4-one Formula: C25H28O4 Exact Mass: 392.1987 Source ID: CNP0282150.1 |
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Formula: C45H38O16 Exact Mass: 834.216 Source ID: CNP0289228.4 |
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Formula: C63H68O21 Exact Mass: 1160.4253 Source ID: CNP0189513.3 |
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Formula: C28H26O10 Exact Mass: 522.1526 Source ID: CNP0132273.1 |
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Formula: C30H24O10 Exact Mass: 544.1369 Source ID: CNP0297993.1 |
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Formula: C30H26O11 Exact Mass: 562.1475 Source ID: CNP0280090.4 |
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Formula: C30H26O12 Exact Mass: 578.1424 Source ID: CNP0261864.3 |
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Formula: C16H14O5 Exact Mass: 286.0841 Source ID: CNP0176916.0 |
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Formula: C11H16O8S Exact Mass: 308.0566 Source ID: CNP0439098.1 |
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Formula: C64H70O22 Exact Mass: 1190.4359 Source ID: CNP0273815.2 |
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Formula: C22H22O12 Exact Mass: 478.1111 Source ID: CNP0220995.3 |
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| Di-O-methylcrenatin Formula: C15H22O9 Exact Mass: 346.1264 Source ID: CNP0115651.1 |
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Formula: C21H22O5 Exact Mass: 354.1467 Source ID: CNP0344106.1 |
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| indol-3-ylacetaldehyde oxime Formula: C10H10N2O Exact Mass: 174.0793 Source ID: CNP0313453.0 |
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| 136003-94-6 Formula: C16H24N6O6 Exact Mass: 396.1757 Source ID: CNP0081390.1 |
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| Pseudouridine Formula: C9H12N2O6 Exact Mass: 244.0695 Source ID: CNP0415086.2 |
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| 7-Hydroxy-2,10-dimethoxyphenanthrene-1,4-dione Formula: C16H12O5 Exact Mass: 284.0685 Source ID: CNP0288498.0 |
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| cis-Zeatin riboside Formula: C15H21N5O5 Exact Mass: 351.1543 Source ID: CNP0240376.4 |
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| Agrobactin Formula: C32H36N4O10 Exact Mass: 636.2431 Source ID: CNP0344679.1 |
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| 6-hydroxy-N-methylmyosmine Formula: C10H12N2O Exact Mass: 176.095 Source ID: CNP0586760.0 |
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