Pathways Knowlegdes
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| Pathway | DOIs | Note |
|---|---|---|
| UDP-N-acetylmuramoyl-pentapeptide biosynthesis I (meso-diaminopimelate containing) Accession ID: BioCyc:META_PWY-6387 |
|
Barreteau H, Kovac A, Boniface A, Sova M, Gobec S, Blanot D. Cytoplasmic steps of peptidoglycan biosynthesis. FEMS Microbiol Rev. 2008 Mar;32(2):168–207. doi: 10.1111/j.1574-6976.2008.00104.x. PMID: 18266853. |
| peptidoglycan biosynthesis I (meso-diaminopimelate containing) Accession ID: BioCyc:ECO_PEPTIDOGLYCANSYN-PWY |
|
Bouhss A, Trunkfield AE, Bugg TD, Mengin-Lecreulx D. The biosynthesis of peptidoglycan lipid-linked intermediates. FEMS Microbiol Rev. 2008 Mar;32(2):208–33. doi: 10.1111/j.1574-6976.2007.00089.x. PMID: 18081839. |
| anhydromuropeptides recycling I Accession ID: BioCyc:META_PWY0-1261 |
|
Johnson JW, Fisher JF, Mobashery S. Bacterial cell-wall recycling. Annals of the New York Academy of Sciences. 2012 Nov 16;1277(1):54–75. doi: 10.1111/j.1749-6632.2012.06813.x.; Park JT, Uehara T. How bacteria consume their own exoskeletons (turnover and recycling of cell wall peptidoglycan). Microbiol Mol Biol Rev. 2008 Jun;72(2):211–27, table of contents. PMID: 18535144; PMCID: PMC2415748. |
| peptidoglycan biosynthesis I (meso-diaminopimelate containing) Accession ID: BioCyc:META_PEPTIDOGLYCANSYN-PWY |
|
Sauvage E, Kerff F, Terrak M, Ayala JA, Charlier P. The penicillin-binding proteins: structure and role in peptidoglycan biosynthesis. FEMS Microbiol Rev. 2008 Mar;32(2):234–58. doi: 10.1111/j.1574-6976.2008.00105.x. PMID: 18266856.; Peters J, Fromherz P. Interaction of electrically charged lipid monolayers with malate dehydrogenase. Biochimica et Biophysica Acta (BBA) - Biomembranes. 1975 Jun;394(1):111–9. doi: 10.1016/0005-2736(75)90209-6. |
| nicotinate degradation I Accession ID: BioCyc:META_PWY-722 |
|
Jiménez JI, Canales Á, Jiménez-Barbero J, Ginalski K, Rychlewski L, García JL, Díaz E. Deciphering the genetic determinants for aerobic nicotinic acid degradation: The nic cluster from Pseudomonas putida KT2440. Proc. Natl. Acad. Sci. U.S.A. 2008 Aug 12;105(32):11329–34. doi: 10.1073/pnas.0802273105.; Behrman EJ, Stanier RY. THE BACTERIAL OXIDATION OF NICOTINIC ACID. Journal of Biological Chemistry. 1957 Oct;228(2):923–45. doi: 10.1016/s0021-9258(18)70671-6. |
| UDP-N-acetylmuramoyl-pentapeptide biosynthesis I (meso-diaminopimelate containing) Accession ID: BioCyc:ECO_PWY-6387 |
|
Sheng J, Huang L, Zhu X, Cai J, Xu Z. Reconstitution of the peptidoglycan cytoplasmic precursor biosynthetic pathway in cell-free system and rapid screening of antisense oligonucleotides for Mur enzymes. Applied Microbiology and Biotechnology. 2014 Jan 07;98(4):1785–94. doi: 10.1007/s00253-013-5467-8.; Murakami R, Muramatsu Y, Minami E, Masuda K, Sakaida Y, Endo S, Suzuki T, Ishida O, Takatsu T, Miyakoshi S, Inukai M, Isono F. A novel assay of bacterial peptidoglycan synthesis for natural product screening. J Antibiot (Tokyo). 2009 Mar;62(3):153–8. doi: 10.1038/ja.2009.4. PMID: 19229285.; Barreteau H, Kovac A, Boniface A, Sova M, Gobec S, Blanot D. Cytoplasmic steps of peptidoglycan biosynthesis. FEMS Microbiol Rev. 2008 Mar;32(2):168–207. doi: 10.1111/j.1574-6976.2008.00104.x. PMID: 18266853.; Delcour J, Ferain T, Deghorain M, Palumbo E, Hols P. The biosynthesis and functionality of the cell-wall of lactic acid bacteria. Antonie Van Leeuwenhoek. 1999 Nov;76(1-4):159–84. doi: 10.1023/a:1002089722581. |
| anhydromuropeptides recycling I Accession ID: BioCyc:ECO_PWY0-1261 |
|
Uehara T, Suefuji K, Jaeger T, Mayer C, Park JT. MurQ Etherase Is Required by Escherichia coli in Order To Metabolize Anhydro- N -Acetylmuramic Acid Obtained either from the Environment or from Its Own Cell Wall. J Bacteriol. 2006 Feb 15;188(4):1660–2. doi: 10.1128/jb.188.4.1660-1662.2006. |