Pathways Knowlegdes

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Pathway DOIs Note
gluconeogenesis I

Accession ID: BioCyc:ECO_GLUCONEO-PWY
  • 10.1007/s00253-002-1202-6
  • 10.1016/j.femsre.2004.11.002
  • 10.1074/jbc.m602553200
  • 10.1128/jb.175.21.6939-6944.1993
Hines JK, Fromm HJ, Honzatko RB. Novel Allosteric Activation Site in Escherichia coli Fructose-1,6-bisphosphatase. Journal of Biological Chemistry. 2006 Jul;281(27):18386–93. doi: 10.1074/jbc.m602553200.; Sauer U, Eikmanns BJ. The PEP—pyruvate—oxaloacetate node as the switch point for carbon flux distribution in bacteria: We dedicate this paper to Rudolf K. Thauer, Director of the Max-Planck-Institute for Terrestrial Microbiology in Marburg, Germany, on the occasion of his 65th birthday. FEMS Microbiol Rev. 2005 Sep;29(4):765–94. doi: 10.1016/j.femsre.2004.11.002.; Peng L, Shimizu K. Global metabolic regulation analysis for Escherichia coli K12 based on protein expression by 2-dimensional electrophoresis and enzyme activity measurement. Applied Microbiology and Biotechnology. 2003 Jan 09;61(2):163–78. doi: 10.1007/s00253-002-1202-6.; Chao YP, Patnaik R, Roof WD, Young RF, Liao JC. Control of gluconeogenic growth by pps and pck in Escherichia coli. J Bacteriol. 1993 Nov;175(21):6939–44. doi: 10.1128/jb.175.21.6939-6944.1993.
sulfate activation for sulfonation

Accession ID: BioCyc:YEAST_PWY-5340
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glucosinolate activation

Accession ID: BioCyc:ARA_PWY-5267
  • 10.1016/j.pbi.2005.03.002
  • 10.1016/j.tplants.2005.12.006
  • 10.1105/tpc.010261
  • 10.1111/j.1365-313x.2006.02716.x
Barth C, Jander G. Arabidopsis myrosinases TGG1 and TGG2 have redundant function in glucosinolate breakdown and insect defense. Plant J. 2006 May;46(4):549–62. doi: 10.1111/j.1365-313x.2006.02716.x. PMID: 16640593.; Grubb CD, Abel S. Glucosinolate metabolism and its control. Trends Plant Sci. 2006 Feb;11(2):89–100. doi: 10.1016/j.tplants.2005.12.006. PMID: 16406306.; Kliebenstein DJ, Kroymann J, Mitchell-Olds T. The glucosinolate-myrosinase system in an ecological and evolutionary context. Curr Opin Plant Biol. 2005 Jun;8(3):264–71. doi: 10.1016/j.pbi.2005.03.002. PMID: 15860423.; Lambrix V, Reichelt M, Mitchell-Olds T, Kliebenstein DJ, Gershenzon J. The Arabidopsis epithiospecifier protein promotes the hydrolysis of glucosinolates to nitriles and influences Trichoplusia ni herbivory. Plant Cell. 2001 Dec;13(12):2793–807. PMID: 11752388; PMCID: PMC139489.
sulfate activation for sulfonation

Accession ID: BioCyc:ARA_PWY-5340
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sulfate reduction I (assimilatory)

Accession ID: BioCyc:VCHO_SO4ASSIM-PWY
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superpathway of sulfate assimilation and cysteine biosynthesis

Accession ID: BioCyc:SHIGELLA_SULFATE-CYS-PWY
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superpathway of L-methionine biosynthesis (by sulfhydrylation)

Accession ID: BioCyc:MTBH37RV_PWY-5345
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superpathway of sulfate assimilation and cysteine biosynthesis

Accession ID: BioCyc:MTBH37RV_SULFATE-CYS-PWY
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superpathway of sulfate assimilation and cysteine biosynthesis

Accession ID: BioCyc:CAULO_SULFATE-CYS-PWY
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superpathway of L-methionine biosynthesis (by sulfhydrylation)

Accession ID: BioCyc:AGRO_PWY-5345
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sulfate activation for sulfonation

Accession ID: BioCyc:AGRO_PWY-5340
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sulfite oxidation III

Accession ID: BioCyc:AURANTIMONAS_PWY-5278
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superpathway of L-methionine biosynthesis (by sulfhydrylation)

Accession ID: BioCyc:AURANTIMONAS_PWY-5345
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superpathway of sulfate assimilation and cysteine biosynthesis

Accession ID: BioCyc:AURANTIMONAS_SULFATE-CYS-PWY
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sulfate activation for sulfonation

Accession ID: BioCyc:AURANTIMONAS_PWY-5340
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sulfate activation for sulfonation

Accession ID: BioCyc:MOUSE_PWY-5340
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sulfate reduction I (assimilatory)

Accession ID: BioCyc:SCO_SO4ASSIM-PWY-1
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superpathway of sulfate assimilation and cysteine biosynthesis

Accession ID: BioCyc:SCO_SULFATE-CYS-PWY
  • 10.1093/nar/28.1.27
Kanehisa M, Goto S. KEGG: kyoto encyclopedia of genes and genomes. Nucleic Acids Res. 2000 Jan 01;28(1):27–30. PMID: 10592173; PMCID: PMC102409.
sulfate activation for sulfonation

Accession ID: BioCyc:BSUB_PWY-5340
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assimilatory sulfate reduction I

Accession ID: BioCyc:BSUB_SO4ASSIM-PWY
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