Pathways Knowlegdes

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Pathway DOIs Note
stachyose degradation

Accession ID: BioCyc:ARA_PWY-6527
  • 10.1104/pp.106.083634
  • 10.1104/pp.69.1.117
Dai N, Petreikov M, Portnoy V, Katzir N, Pharr DM, Schaffer AA. Cloning and expression analysis of a UDP-galactose/glucose pyrophosphorylase from melon fruit provides evidence for the major metabolic pathway of galactose metabolism in raffinose oligosaccharide metabolizing plants. Plant Physiol. 2006 Sep;142(1):294–304. PMID: 16829585; PMCID: PMC1557607.; Gross KC, Pharr DM. A Potential Pathway for Galactose Metabolism in Cucumis sativus L., A Stachyose Transporting Species. Plant Physiol. 1982 Jan 01;69(1):117–21. doi: 10.1104/pp.69.1.117.
sucrose biosynthesis I (from photosynthesis)

Accession ID: BioCyc:ARA_SUCSYN-PWY
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sucrose degradation III (sucrose invertase)

Accession ID: BioCyc:ARA_PWY-621
  • 10.1007/s004250000424
  • 10.1046/j.1365-313x.1993.04020367.x
Ciereszko I, Johansson H, Hurry V, Kleczkowski LA. Phosphate status affects the gene expression, protein content and enzymatic activity of UDP-glucose pyrophosphorylase in wild-type and pho mutants of Arabidopsis. Planta. 2001 Mar;212(4):598–605. doi: 10.1007/s004250000424. PMID: 11525517.; Martin T, Frommer WB, Salanoubat M, Willmitzer L. Expression of an Arabidopsis sucrose synthase gene indicates a role in metabolization of sucrose both during phloem loading and in sink organs. The Plant Journal. 1993 Aug;4(2):367–77. doi: 10.1046/j.1365-313x.1993.04020367.x.
sucrose biosynthesis

Accession ID: BioCyc:LEISH_SUCSYN-PWY
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sucrose degradation II (sucrose synthase)

Accession ID: BioCyc:SCO_PWY-3801
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sucrose degradation IV

Accession ID: BioCyc:10403S_RAST_PWY-5384
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sucrose degradation III

Accession ID: BioCyc:THAPS_PWY-621
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galactose degradation III

Accession ID: BioCyc:THAPS_PWY-3821
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sucrose degradation I (sucrose phosphotransferase)

Accession ID: BioCyc:PDIF272563_SUCUTIL-PWY
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sucrose degradation II (sucrose synthase)

Accession ID: BioCyc:BTHE_PWY-3801
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sucrose degradation

Accession ID: BioCyc:HUMAN_PWY66-373
  • 10.1016/s0021-9258(19)41116-2
Conklin KA, Yamashiro KM, Gray GM. Human intestinal sucrase-isomaltase. Identification of free sucrase and isomaltase and cleavage of the hybrid into active distinct subunits. Journal of Biological Chemistry. 1975 Aug;250(15):5735–41. doi: 10.1016/s0021-9258(19)41116-2.
sucrose degradation IV (sucrose phosphorylase)

Accession ID: BioCyc:META_PWY-5384
  • 10.1007/s00253-004-1885-y
  • 10.1128/jb.186.19.6515-6525.2004
Reid SJ, Abratt VR. Sucrose utilisation in bacteria: genetic organisation and regulation. Applied Microbiology and Biotechnology. 2005 Jan 20;67(3):312–21. doi: 10.1007/s00253-004-1885-y.; Caescu CI, Vidal O, Krzewinski F, Artenie V, Bouquelet S. Bifidobacterium longum Requires a Fructokinase (Frk; ATP: d -Fructose 6-Phosphotransferase, EC 2.7.1.4) for Fructose Catabolism. J Bacteriol. 2004 Oct;186(19):6515–25. doi: 10.1128/jb.186.19.6515-6525.2004.
sucrose degradation VII (sucrose 3-dehydrogenase)

Accession ID: BioCyc:META_SUCROSEUTIL2-PWY
  • 10.1007/s002530050973
Schuerman PL, Liu JS, Mou H, Dandekar AM. 3-Ketoglycoside-mediated metabolism of sucrose in E. coli as conferred by genes from Agrobacterium tumefaciens. Applied Microbiology and Biotechnology. 1997 May 28;47(5):560–5. doi: 10.1007/s002530050973.
sucrose degradation I (sucrose phosphotransferase)

Accession ID: BioCyc:META_SUCUTIL-PWY
  • 10.1007/s00253-004-1885-y
  • 10.1099/00221287-134-6-1635
Reid SJ, Abratt VR. Sucrose utilisation in bacteria: genetic organisation and regulation. Applied Microbiology and Biotechnology. 2005 Jan 20;67(3):312–21. doi: 10.1007/s00253-004-1885-y.; Sprenger GA, Lengeler JW. Analysis of sucrose catabolism in Klebsiella pneumoniae and in Scr+ derivatives of Escherichia coli K12. J Gen Microbiol. 1988 Jun;134(6):1635–44. doi: 10.1099/00221287-134-6-1635. PMID: 3065452.
sucrose degradation III

Accession ID: BioCyc:YEAST_PWY-621
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sucrose biosynthesis II

Accession ID: BioCyc:ARA_PWY-7238
  • 10.1016/j.phytochem.2010.07.007
  • 10.1104/pp.106.083634
  • 10.1104/pp.106.086850
  • 10.1104/pp.66.5.864
  • 10.1111/j.1365-3040.2005.01480.x
  • 10.1111/j.1365-313x.2003.02012.x
  • 10.1111/j.1365-313x.2006.02732.x
  • 10.1199/tab.0160
Streb S, Zeeman SC. Starch metabolism in Arabidopsis. Arabidopsis Book. 2012;10():e0160. PMID: 23393426; PMCID: PMC3527087.; Wind J, Smeekens S, Hanson J. Sucrose: metabolite and signaling molecule. Phytochemistry. 2010 Oct;71(14-15):1610–4. doi: 10.1016/j.phytochem.2010.07.007. PMID: 20696445.; Lu Y, Steichen JM, Yao J, Sharkey TD. The role of cytosolic alpha-glucan phosphorylase in maltose metabolism and the comparison of amylomaltase in Arabidopsis and Escherichia coli. Plant Physiol. 2006 Nov;142(3):878–89. PMID: 16980562; PMCID: PMC1630732.; Dai N, Petreikov M, Portnoy V, Katzir N, Pharr DM, Schaffer AA. Cloning and expression analysis of a UDP-galactose/glucose pyrophosphorylase from melon fruit provides evidence for the major metabolic pathway of galactose metabolism in raffinose oligosaccharide metabolizing plants. Plant Physiol. 2006 Sep;142(1):294–304. PMID: 16829585; PMCID: PMC1557607.; Fettke J, Chia T, Eckermann N, Smith A, Steup M. A transglucosidase necessary for starch degradation and maltose metabolism in leaves at night acts on cytosolic heteroglycans (SHG). Plant J. 2006 May;46(4):668–84. doi: 10.1111/j.1365-313x.2006.02732.x. PMID: 16640603.; Lu Y, Sharkey TD. The importance of maltose in transitory starch breakdown. Plant Cell Environ. 2006 Mar;29(3):353–66. doi: 10.1111/j.1365-3040.2005.01480.x. PMID: 17080591.; Chia T, Thorneycroft D, Chapple A, Messerli G, Chen J, Zeeman SC, Smith SM, Smith AM. A cytosolic glucosyltransferase is required for conversion of starch to sucrose in Arabidopsis leaves at night. The Plant Journal. 2004 Jan 26;37(6):853–63. doi: 10.1111/j.1365-313x.2003.02012.x.; Preiss J, Okita TW, Greenberg E. Characterization of the spinach leaf phosphorylases. Plant Physiol. 1980 Nov;66(5):864–9. PMID: 16661543; PMCID: PMC440743.
sucrose degradation III

Accession ID: BioCyc:LEISH_PWY-621
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sucrose biosynthesis I (from photosynthesis)

Accession ID: BioCyc:ECOO157_SUCSYN-PWY
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sucrose degradation III (sucrose invertase)

Accession ID: BioCyc:ANTHRA_PWY-621
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sucrose biosynthesis I (from photosynthesis)

Accession ID: BioCyc:SCO_SUCSYN-PWY
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