Pathways Knowlegdes
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| Pathway | DOIs | Note |
|---|---|---|
| sucrose degradation III (sucrose invertase) Accession ID: BioCyc:CORYNE_PWY-621 |
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| lychnose and isolychnose biosynthesis Accession ID: BioCyc:META_PWY-6524 |
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Vanhaecke M, Dyubankova N, Lescrinier E, Van den Ende W. Metabolism of galactosyl-oligosaccharides in Stellaria media--discovery of stellariose synthase, a novel type of galactosyltransferase. Phytochemistry. 2010 Jul;71(10):1095–103. doi: 10.1016/j.phytochem.2010.04.012. PMID: 20452631. |
| ajugose biosynthesis II (galactinol-independent) Accession ID: BioCyc:META_PWY-5343 |
|
Tapernoux-Lüthi EM, Böhm A, Keller F. Cloning, functional expression, and characterization of the raffinose oligosaccharide chain elongation enzyme, galactan:galactan galactosyltransferase, from common bugle leaves. Plant Physiol. 2004 Apr;134(4):1377–87. PMID: 15034167; PMCID: PMC419815.; Haab CI, Keller F. Purification and characterization of the raffinose oligosaccharide chain elongation enzyme, galactan : galactan galactosyltransferase (GGT), from Ajuga reptans leaves. Physiol Plant. 2002 Mar;114(3):361–71. doi: 10.1034/j.1399-3054.2002.1140305.x. PMID: 12060258. |
| superpathway of anaerobic sucrose degradation Accession ID: BioCyc:META_PWY-7345 |
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Dai N, Petreikov M, Portnoy V, Katzir N, Pharr DM, Schaffer AA. Cloning and expression analysis of a UDP-galactose/glucose pyrophosphorylase from melon fruit provides evidence for the major metabolic pathway of galactose metabolism in raffinose oligosaccharide metabolizing plants. Plant Physiol. 2006 Sep;142(1):294–304. PMID: 16829585; PMCID: PMC1557607. |
| flavonol biosynthesis Accession ID: BioCyc:META_PWY-3101 |
|
Li C, Bai Y, Li S, Chen H, Han X, Zhao H, Shao J, Park SU, Wu Q. Cloning, characterization, and activity analysis of a flavonol synthase gene FtFLS1 and its association with flavonoid content in tartary buckwheat. J Agric Food Chem. 2012 May 23;60(20):5161–8. doi: 10.1021/jf205192q. PMID: 22563787.; Xu F, Li L, Zhang W, Cheng H, Sun N, Cheng S, Wang Y. Isolation, characterization, and function analysis of a flavonol synthase gene from Ginkgo biloba. Molecular Biology Reports. 2011 Jun 05;39(3):2285–96. doi: 10.1007/s11033-011-0978-9.; Han Y, Vimolmangkang S, Soria-Guerra RE, Rosales-Mendoza S, Zheng D, Lygin AV, Korban SS. Ectopic expression of apple F3'H genes contributes to anthocyanin accumulation in the Arabidopsis tt7 mutant grown under nitrogen stress. Plant Physiol. 2010 Jun;153(2):806–20. PMID: 20357139; PMCID: PMC2879788.; Xu F, Cheng H, Cai R, Li LL, Chang J, Zhu J, Zhang FX, Chen LJ, Wang Y, Cheng SH, Cheng SY. Molecular Cloning and Function Analysis of an Anthocyanidin Synthase Gene from Ginkgo biloba, and Its Expression in Abiotic Stress Responses. Molecules and Cells. 2008 Dec;26(6):536–47. doi: 10.1016/s1016-8478(23)14034-9.; Lukacin R, Wellmann F, Britsch L, Martens S, Matern U. Flavonol synthase from Citrus unshiu is a bifunctional dioxygenase. Phytochemistry. 2003 Feb;62(3):287–92. doi: 10.1016/s0031-9422(02)00567-8. PMID: 12620339.; Wellmann F, Lukacin R, Moriguchi T, Britsch L, Schiltz E, Matern U. Functional expression and mutational analysis of flavonol synthase from Citrus unshiu. European Journal of Biochemistry. 2002 Aug;269(16):4134–42. doi: 10.1046/j.1432-1033.2002.03108.x.; Prescott AG, Stamford NP, Wheeler G, Firmin JL. In vitro properties of a recombinant flavonol synthase from Arabidopsis thaliana. Phytochemistry. 2002 Jul;60(6):589–93. doi: 10.1016/s0031-9422(02)00155-3. PMID: 12126705.; Veit M, Pauli GF. Major flavonoids from Arabidopsis thaliana leaves. J Nat Prod. 1999 Sep;62(9):1301–3. doi: 10.1021/np990080o. PMID: 10514319.; Kaltenbach M, Schröder G, Schmelzer E, Lutz V, Schröder J. Flavonoid hydroxylase from Catharanthus roseus: cDNA, heterologous expression, enzyme properties and cell-type specific expression in plants. Plant J. 1999 Jul;19(2):183–93. doi: 10.1046/j.1365-313x.1999.00524.x. PMID: 10476065.; Pelletier MK, Murrell JR, Shirley BW. Characterization of flavonol synthase and leucoanthocyanidin dioxygenase genes in Arabidopsis. Further evidence for differential regulation of 'early' and 'late' genes. Plant Physiol. 1997 Apr;113(4):1437–45. PMID: 9112784; PMCID: PMC158268.; HAGMANN M, HELLER W, GRISEBACH H. Induction and Characterization of a Microsomal Flavonoid 3'-Hydroxylase from Parsley Cell Cultures. European Journal of Biochemistry. 1983 Aug;134(3):547–54. doi: 10.1111/j.1432-1033.1983.tb07601.x. |
| stachyose biosynthesis Accession ID: BioCyc:ARA_PWY-5337 |
|
Zuther E, Büchel K, Hundertmark M, Stitt M, Hincha DK, Heyer AG. The role of raffinose in the cold acclimation response of Arabidopsis thaliana. FEBS Lett. 2004 Oct 08;576(1-2):169–73. doi: 10.1016/j.febslet.2004.09.006. PMID: 15474032.; Taji T, Ohsumi C, Iuchi S, Seki M, Kasuga M, Kobayashi M, Yamaguchi-Shinozaki K, Shinozaki K. Important roles of drought- and cold-inducible genes for galactinol synthase in stress tolerance in Arabidopsis thaliana. The Plant Journal. 2002 Feb;29(4):417–26. doi: 10.1046/j.0960-7412.2001.01227.x.; Bentsink L, Alonso-Blanco C, Vreugdenhil D, Tesnier K, Groot SP, Koornneef M. Genetic analysis of seed-soluble oligosaccharides in relation to seed storability of Arabidopsis. Plant Physiol. 2000 Dec;124(4):1595–604. PMID: 11115877; PMCID: PMC59858.; Hoch G, Peterbauer T, Richter A. Purification and Characterization of Stachyose Synthase from Lentil (Lens culinaris) Seeds: Galactopinitol and Stachyose Synthesis. Archives of Biochemistry and Biophysics. 1999 Jun;366(1):75–81. doi: 10.1006/abbi.1999.1212. |
| sucrose degradation III Accession ID: BioCyc:TRYPANO_PWY-621 |
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| sucrose biosynthesis Accession ID: BioCyc:PLASMO_SUCSYN-PWY |
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| sucrose degradation to ethanol and lactate (anaerobic) Accession ID: BioCyc:PLASMO_PWY-3801 |
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| sucrose biosynthesis I (from photosynthesis) Accession ID: BioCyc:CAULO_SUCSYN-PWY |
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| sucrose degradation I (sucrose phosphotransferase) Accession ID: BioCyc:AGRO_SUCUTIL-PWY |
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| sucrose degradation I (sucrose phosphotransferase) Accession ID: BioCyc:SCO_SUCUTIL-PWY |
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| stachyose degradation Accession ID: BioCyc:THAPS_PWY-6527 |
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| fructan degradation Accession ID: BioCyc:META_PWY-862 |
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Tamura KI, Sanada Y, Tase K, Komatsu T, Yoshida M. Pp6-FEH1 encodes an enzyme for degradation of highly polymerized levan and is transcriptionally induced by defoliation in timothy (Phleum pratense L.). J Exp Bot. 2011 Jun;62(10):3421–31. PMID: 21317211; PMCID: PMC3130170.; Van Den Ende W, Clerens S, Vergauwen R, Van Riet L, Van Laere A, Yoshida M, Kawakami A. Fructan 1-exohydrolases. beta-(2,1)-trimmers during graminan biosynthesis in stems of wheat? Purification, characterization, mass mapping, and cloning of two fructan 1-exohydrolase isoforms. Plant Physiol. 2003 Feb;131(2):621–31. PMID: 12586886; PMCID: PMC166838.; Henson CA, Livingston III DP. Purification and Characterization of an Oat Fructan Exohydrolase That Preferentially Hydrolyzes [beta]-2,6-Fructans. Plant Physiol. 1996 Feb 01;110(2):639–44. doi: 10.1104/pp.110.2.639. |
| sucrose biosynthesis II Accession ID: BioCyc:META_PWY-7238 |
|
Streb S, Zeeman SC. Starch metabolism in Arabidopsis. Arabidopsis Book. 2012;10():e0160. PMID: 23393426; PMCID: PMC3527087.; Wind J, Smeekens S, Hanson J. Sucrose: metabolite and signaling molecule. Phytochemistry. 2010 Oct;71(14-15):1610–4. doi: 10.1016/j.phytochem.2010.07.007. PMID: 20696445.; Lu Y, Steichen JM, Yao J, Sharkey TD. The role of cytosolic alpha-glucan phosphorylase in maltose metabolism and the comparison of amylomaltase in Arabidopsis and Escherichia coli. Plant Physiol. 2006 Nov;142(3):878–89. PMID: 16980562; PMCID: PMC1630732.; Dai N, Petreikov M, Portnoy V, Katzir N, Pharr DM, Schaffer AA. Cloning and expression analysis of a UDP-galactose/glucose pyrophosphorylase from melon fruit provides evidence for the major metabolic pathway of galactose metabolism in raffinose oligosaccharide metabolizing plants. Plant Physiol. 2006 Sep;142(1):294–304. PMID: 16829585; PMCID: PMC1557607.; Fettke J, Chia T, Eckermann N, Smith A, Steup M. A transglucosidase necessary for starch degradation and maltose metabolism in leaves at night acts on cytosolic heteroglycans (SHG). Plant J. 2006 May;46(4):668–84. doi: 10.1111/j.1365-313x.2006.02732.x. PMID: 16640603.; Lu Y, Sharkey TD. The importance of maltose in transitory starch breakdown. Plant Cell Environ. 2006 Mar;29(3):353–66. doi: 10.1111/j.1365-3040.2005.01480.x. PMID: 17080591.; Chia T, Thorneycroft D, Chapple A, Messerli G, Chen J, Zeeman SC, Smith SM, Smith AM. A cytosolic glucosyltransferase is required for conversion of starch to sucrose in Arabidopsis leaves at night. The Plant Journal. 2004 Jan 26;37(6):853–63. doi: 10.1111/j.1365-313x.2003.02012.x.; Preiss J, Okita TW, Greenberg E. Characterization of the spinach leaf phosphorylases. Plant Physiol. 1980 Nov;66(5):864–9. PMID: 16661543; PMCID: PMC440743. |
| sucrose biosynthesis III Accession ID: BioCyc:META_PWY-7347 |
|
But SY, Khmelenina VN, Reshetnikov AS, Trotsenko YA. Bifunctional sucrose phosphate synthase/phosphatase is involved in the sucrose biosynthesis by Methylobacillus flagellatus KT. FEMS Microbiol Lett. 2013 Oct;347(1):43–51. doi: 10.1111/1574-6968.12219. PMID: 23865613. |
| stellariose and mediose biosynthesis Accession ID: BioCyc:META_PWY-6525 |
|
Vanhaecke M, Dyubankova N, Lescrinier E, Van den Ende W. Metabolism of galactosyl-oligosaccharides in Stellaria media--discovery of stellariose synthase, a novel type of galactosyltransferase. Phytochemistry. 2010 Jul;71(10):1095–103. doi: 10.1016/j.phytochem.2010.04.012. PMID: 20452631. |
| stachyose biosynthesis Accession ID: BioCyc:META_PWY-5337 |
|
Zuther E, Büchel K, Hundertmark M, Stitt M, Hincha DK, Heyer AG. The role of raffinose in the cold acclimation response of Arabidopsis thaliana. FEBS Lett. 2004 Oct 08;576(1-2):169–73. doi: 10.1016/j.febslet.2004.09.006. PMID: 15474032.; Bentsink L, Alonso-Blanco C, Vreugdenhil D, Tesnier K, Groot SP, Koornneef M. Genetic analysis of seed-soluble oligosaccharides in relation to seed storability of Arabidopsis. Plant Physiol. 2000 Dec;124(4):1595–604. PMID: 11115877; PMCID: PMC59858.; Hoch G, Peterbauer T, Richter A. Purification and Characterization of Stachyose Synthase from Lentil (Lens culinaris) Seeds: Galactopinitol and Stachyose Synthesis. Archives of Biochemistry and Biophysics. 1999 Jun;366(1):75–81. doi: 10.1006/abbi.1999.1212. |
| sucrose degradation II (sucrose synthase) Accession ID: BioCyc:META_PWY-3801 |
|
Dai N, Petreikov M, Portnoy V, Katzir N, Pharr DM, Schaffer AA. Cloning and expression analysis of a UDP-galactose/glucose pyrophosphorylase from melon fruit provides evidence for the major metabolic pathway of galactose metabolism in raffinose oligosaccharide metabolizing plants. Plant Physiol. 2006 Sep;142(1):294–304. PMID: 16829585; PMCID: PMC1557607. |
| sucrose degradation II (sucrose synthase) Accession ID: BioCyc:ARA_PWY-3801 |
|
Dai N, Petreikov M, Portnoy V, Katzir N, Pharr DM, Schaffer AA. Cloning and expression analysis of a UDP-galactose/glucose pyrophosphorylase from melon fruit provides evidence for the major metabolic pathway of galactose metabolism in raffinose oligosaccharide metabolizing plants. Plant Physiol. 2006 Sep;142(1):294–304. PMID: 16829585; PMCID: PMC1557607. |