Hydrogen (BioCAD00000012217)

plant natural products

Metabolite Card

Formula: H2 (2.0156)
SMILES: [H][H]

Synonyms [en]

Hydrogen; Dihydrogen; Molecular hydrogen; H2; hydrogen molecule; E 949

Reviewed

Last reviewed on 2024-06-28.

Cite this Page

Hydrogen. 数据之源,洞见之始. SMRUCC genomics institute, a synthetic life researcher from China. https://biocad_registry.innovation.ac.cn/s/(-)-arctiin (retrieved 2026-01-03) (CAD Registry RN: BioCAD00000012217). Licensed under the Attribution-Noncommercial 4.0 International License (CC BY-NC 4.0).

Note

Hydrogen is a colorless, odorless, nonmetallic, tasteless, highly flammable diatomic gas with the molecular formula H2. With an atomic weight of 1.00794, hydrogen is the lightest element. Besides the common H1 isotope, hydrogen exists as the stable isotope Deuterium and the unstable, radioactive isotope Tritium. Hydrogen is the most abundant of the chemical elements, constituting roughly 75% of the universe's elemental mass. Hydrogen can form compounds with most elements and is present in water and most organic compounds. It plays a particularly important role in acid-base chemistry, in which many reactions involve the exchange of protons between soluble molecules. Oxidation of hydrogen, in the sense of removing its electron, formally gives H+, containing no electrons and a nucleus which is usually composed of one proton. That is why H+ is often called a proton. This species is central to discussion of acids. Under the Bronsted-Lowry theory, acids are proton donors, while bases are proton acceptors. A bare proton H+ cannot exist in solution because of its strong tendency to attach itself to atoms or molecules with electrons. However, the term 'proton' is used loosely to refer to positively charged or cationic hydrogen, denoted H+. H2 is a product of some types of anaerobic metabolism and is produced by several microorganisms, usually via reactions catalyzed by iron- or nickel-containing enzymes called hydrogenases. These enzymes catalyze the reversible redox reaction between H2 and its component two protons and two electrons. Creation of hydrogen gas occurs in the transfer of reducing equivalents produced during pyruvate fermentation to water. Hydrogen has been found to be a metabolite of Citrobacter, Cyanobacteria, Enterobacter, Halobacterium and Rhodobacteraceae (PMID: 28042989; PMID: 16371161) (https://www.insa.nic.in/writereaddata/UpLoadedFiles/PINSA/Vol51B_1985_2_Art16.pdf) (https://www.researchgate.net/publication/222428793_High_Hydrogen_Yield_from_a_Two-step_Process_of_Dark-_and_Photo-fermentation_of_Sucrose) (Tao, Y; Chen, Y; Wu, Y; He, Y; Zhou, Z (2007). "High hydrogen yield from a two-step process of dark- and photo-fermentation of sucrose". International Journal of Hydrogen Energy. 32 (2): 200-206).

Entity Information

DBLinks

Other DBLinks
  • CAS Registry Number: 12184-90-6
  • CAS Registry Number: 12184-96-2
  • CAS Registry Number: 12385-13-6
  • CAS Registry Number: 12596-12-2
  • CAS Registry Number: 12596-15-5
  • CAS Registry Number: 1333-74-0
  • PubChem: 5460631
  • PubChem: 783
  • ChEBI: ChEBI:18140
  • ChEBI: ChEBI:18276
  • ChEBI: ChEBI:29236
  • HMDB: HMDB0001362
  • KEGG: C00282
  • BioCyc: HYDROGEN-MOLECULE
  • NCBI MeSH: Hydrogen
  • Wikipedia: Hydrogen
  • DrugBank: DB15127
  • Coconut NaturalProduct: CNP0512708.0
  • Coconut NaturalProduct: CNP0528070.0

Class / Ontology

Metabolic Network
ID EC Number Name
KEGG:R00019 1.12.7.2 hydrogen:ferredoxin oxidoreductase;
KEGG:R00067 1.18.6.1 reduced ferredoxin:dinitrogen oxidoreductase (ATP-hydrolysing)
KEGG:R00700 1.12.1.2 hydrogen:NAD+ oxidoreductase
KEGG:R02965 1.12.5.1 hydrogen:quinone oxidoreductase
KEGG:R03025 1.12.98.1 hydrogen:coenzyme F420 oxidoreductase
KEGG:R04015 1.12.2.1 hydrogen:ferricytochrome-c3 oxidoreductase
KEGG:R04455 1.12.98.2 hydrogen:N5,N10-methenyltetraydromethanopterin oxidoreductase
KEGG:R05185 1.18.6.1 reduced ferredoxin:dinitrogen oxidoreductase (ATP-hydrolysing)
KEGG:R05186 1.19.6.1 reduced flavodoxin:dinitrogen oxidoreductase (ATP-hydrolysing)
KEGG:R07181 1.12.1.3 hydrogen:NADP+ oxidoreductase
KEGG:R07182 1.12.99.6 hydrogen:(acceptor) oxidoreductase
KEGG:R09095 1.12.2.- hydrogen:2-(2,3-dihydropentaprenyloxy)phenazine oxidoreductase
KEGG:R09508 1.12.1.4 hydrogen:NAD+, ferredoxin oxidoreductase
KEGG:R10390 1.12.98.4 H2:polysulfide oxidoreductase
KEGG:R11943 1.8.98.5 CoB,CoM,ferredoxin:H2 oxidoreductase
KEGG:R12084 1.18.6.2 ferredoxin:dinitrogen oxidoreductase (ATP-hydrolysing, vanadium-dependent)
KEGG:R12754 1.17.98.- C00011 + C00282<=>C00058
BioCyc:RXN-16420 1.12.98.- Knallgas reaction
BioCyc:RXN0-7399 1.12.5.1 PROTON + Menaquinones + HYDROGEN-MOLECULE --> PROTON + Menaquinols
BioCyc:HYDROG-RXN 1.12.7.2 hydrogenase
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Organism Source

Taxonomy Source

  1. Physalis angulata [ncbi taxid: 113208]

Pathway Synthetic

pathway id name
BioCyc:META_GLUDEG-II-PWY L-glutamate degradation VII (to butanoate)
BioCyc:META_N2FIX-PWY nitrogen fixation I (ferredoxin)
BioCyc:META_PWY-6758 hydrogen production II
BioCyc:META_PWY-6744 hydrogen production I
BioCyc:META_PWY-6765 hydrogen production IV
BioCyc:META_PWY-6772 hydrogen production V
BioCyc:TRYPANO_ANARESP1-PWY respiration (anaerobic)
BioCyc:SHIGELLA_P283-PWY hydrogen oxidation I (aerobic)
BioCyc:ECOO157_P283-PWY hydrogen oxidation I (aerobic)
BioCyc:ECOL199310_ANARESP1-PWY respiration (anaerobic)
BioCyc:CAULO_FERMENTATION-PWY mixed acid fermentation
BioCyc:SCO_ANARESPDON-PWY respiration (anaerobic)-- electron donors reaction list
BioCyc:FLY_GLUDEG-II-PWY L-glutamate degradation VII (to butanoate)
BioCyc:ECOL413997_ANARESP1-PWY respiration (anaerobic)
BioCyc:MOB3B_ANARESP1-PWY respiration (anaerobic)
BioCyc:10403S_RAST_PWY-6772 hydrogen production V
BioCyc:THAPS_ANARESP1-PWY respiration (anaerobic)
BioCyc:CLOSSAC_P283-PWY hydrogen oxidation I (aerobic)
BioCyc:CLOSSAC_PWY-6780 hydrogen production VI
BioCyc:BTHE_P283-PWY hydrogen oxidation I (aerobic)
View All Pathways