Hydrogen (BioCAD00000012217)
Metabolite Card
Formula: H2 (2.0156)
SMILES: [H][H]
Synonyms [en]
Hydrogen; Dihydrogen; Molecular hydrogen; H2; hydrogen molecule; E 949
Last reviewed on 2024-06-28.
Cite this Page
Hydrogen. 数据之源,洞见之始. SMRUCC genomics institute, a synthetic life researcher from China.
https://biocad_registry.innovation.ac.cn/s/(-)-arctiin
(retrieved
2026-01-03) (CAD Registry RN: BioCAD00000012217). Licensed
under the Attribution-Noncommercial 4.0 International License (CC BY-NC 4.0).
Note
Hydrogen is a colorless, odorless, nonmetallic, tasteless, highly flammable diatomic gas with the molecular formula H2. With an atomic weight of 1.00794, hydrogen is the lightest element. Besides the common H1 isotope, hydrogen exists as the stable isotope Deuterium and the unstable, radioactive isotope Tritium. Hydrogen is the most abundant of the chemical elements, constituting roughly 75% of the universe's elemental mass. Hydrogen can form compounds with most elements and is present in water and most organic compounds. It plays a particularly important role in acid-base chemistry, in which many reactions involve the exchange of protons between soluble molecules. Oxidation of hydrogen, in the sense of removing its electron, formally gives H+, containing no electrons and a nucleus which is usually composed of one proton. That is why H+ is often called a proton. This species is central to discussion of acids. Under the Bronsted-Lowry theory, acids are proton donors, while bases are proton acceptors. A bare proton H+ cannot exist in solution because of its strong tendency to attach itself to atoms or molecules with electrons. However, the term 'proton' is used loosely to refer to positively charged or cationic hydrogen, denoted H+. H2 is a product of some types of anaerobic metabolism and is produced by several microorganisms, usually via reactions catalyzed by iron- or nickel-containing enzymes called hydrogenases. These enzymes catalyze the reversible redox reaction between H2 and its component two protons and two electrons. Creation of hydrogen gas occurs in the transfer of reducing equivalents produced during pyruvate fermentation to water. Hydrogen has been found to be a metabolite of Citrobacter, Cyanobacteria, Enterobacter, Halobacterium and Rhodobacteraceae (PMID: 28042989; PMID: 16371161) (https://www.insa.nic.in/writereaddata/UpLoadedFiles/PINSA/Vol51B_1985_2_Art16.pdf) (https://www.researchgate.net/publication/222428793_High_Hydrogen_Yield_from_a_Two-step_Process_of_Dark-_and_Photo-fermentation_of_Sucrose) (Tao, Y; Chen, Y; Wu, Y; He, Y; Zhou, Z (2007). "High hydrogen yield from a two-step process of dark- and photo-fermentation of sucrose". International Journal of Hydrogen Energy. 32 (2): 200-206).
DBLinks
- CAS Registry Number: 1333-74-0
- PubChem CID: 783
- ChEBI: 18276
- HMDB: HMDB0001362
- LipidMaps:
- KEGG: C00282
- BioCyc: HYDROGEN-MOLECULE
- NCBI MeSH: Hydrogen
- Wikipedia: Hydrogen
Other DBLinks
- CAS Registry Number: 12184-90-6
- CAS Registry Number: 12184-96-2
- CAS Registry Number: 12385-13-6
- CAS Registry Number: 12596-12-2
- CAS Registry Number: 12596-15-5
- CAS Registry Number: 1333-74-0
- PubChem: 5460631
- PubChem: 783
- ChEBI: ChEBI:18140
- ChEBI: ChEBI:18276
- ChEBI: ChEBI:29236
- HMDB: HMDB0001362
- KEGG: C00282
- BioCyc: HYDROGEN-MOLECULE
- NCBI MeSH: Hydrogen
- Wikipedia: Hydrogen
- DrugBank: DB15127
- Coconut NaturalProduct: CNP0512708.0
- Coconut NaturalProduct: CNP0528070.0
Class / Ontology
- WishartLab ClassyFire: [Other non-metal hydrides] Other non-metal hydrides
- ChEBI: [CHEBI:18276] dihydrogen
| ID | EC Number | Name |
|---|---|---|
| KEGG:R00019 | 1.12.7.2 | hydrogen:ferredoxin oxidoreductase; |
| KEGG:R00067 | 1.18.6.1 | reduced ferredoxin:dinitrogen oxidoreductase (ATP-hydrolysing) |
| KEGG:R00700 | 1.12.1.2 | hydrogen:NAD+ oxidoreductase |
| KEGG:R02965 | 1.12.5.1 | hydrogen:quinone oxidoreductase |
| KEGG:R03025 | 1.12.98.1 | hydrogen:coenzyme F420 oxidoreductase |
| KEGG:R04015 | 1.12.2.1 | hydrogen:ferricytochrome-c3 oxidoreductase |
| KEGG:R04455 | 1.12.98.2 | hydrogen:N5,N10-methenyltetraydromethanopterin oxidoreductase |
| KEGG:R05185 | 1.18.6.1 | reduced ferredoxin:dinitrogen oxidoreductase (ATP-hydrolysing) |
| KEGG:R05186 | 1.19.6.1 | reduced flavodoxin:dinitrogen oxidoreductase (ATP-hydrolysing) |
| KEGG:R07181 | 1.12.1.3 | hydrogen:NADP+ oxidoreductase |
| KEGG:R07182 | 1.12.99.6 | hydrogen:(acceptor) oxidoreductase |
| KEGG:R09095 | 1.12.2.- | hydrogen:2-(2,3-dihydropentaprenyloxy)phenazine oxidoreductase |
| KEGG:R09508 | 1.12.1.4 | hydrogen:NAD+, ferredoxin oxidoreductase |
| KEGG:R10390 | 1.12.98.4 | H2:polysulfide oxidoreductase |
| KEGG:R11943 | 1.8.98.5 | CoB,CoM,ferredoxin:H2 oxidoreductase |
| KEGG:R12084 | 1.18.6.2 | ferredoxin:dinitrogen oxidoreductase (ATP-hydrolysing, vanadium-dependent) |
| KEGG:R12754 | 1.17.98.- | C00011 + C00282<=>C00058 |
| BioCyc:RXN-16420 | 1.12.98.- | Knallgas reaction |
| BioCyc:RXN0-7399 | 1.12.5.1 | PROTON + Menaquinones + HYDROGEN-MOLECULE --> PROTON + Menaquinols |
| BioCyc:HYDROG-RXN | 1.12.7.2 | hydrogenase |
Taxonomy Source
Pathway Synthetic
| pathway id | name |
|---|---|
| BioCyc:META_GLUDEG-II-PWY | L-glutamate degradation VII (to butanoate) |
| BioCyc:META_N2FIX-PWY | nitrogen fixation I (ferredoxin) |
| BioCyc:META_PWY-6758 | hydrogen production II |
| BioCyc:META_PWY-6744 | hydrogen production I |
| BioCyc:META_PWY-6765 | hydrogen production IV |
| BioCyc:META_PWY-6772 | hydrogen production V |
| BioCyc:TRYPANO_ANARESP1-PWY | respiration (anaerobic) |
| BioCyc:SHIGELLA_P283-PWY | hydrogen oxidation I (aerobic) |
| BioCyc:ECOO157_P283-PWY | hydrogen oxidation I (aerobic) |
| BioCyc:ECOL199310_ANARESP1-PWY | respiration (anaerobic) |
| BioCyc:CAULO_FERMENTATION-PWY | mixed acid fermentation |
| BioCyc:SCO_ANARESPDON-PWY | respiration (anaerobic)-- electron donors reaction list |
| BioCyc:FLY_GLUDEG-II-PWY | L-glutamate degradation VII (to butanoate) |
| BioCyc:ECOL413997_ANARESP1-PWY | respiration (anaerobic) |
| BioCyc:MOB3B_ANARESP1-PWY | respiration (anaerobic) |
| BioCyc:10403S_RAST_PWY-6772 | hydrogen production V |
| BioCyc:THAPS_ANARESP1-PWY | respiration (anaerobic) |
| BioCyc:CLOSSAC_P283-PWY | hydrogen oxidation I (aerobic) |
| BioCyc:CLOSSAC_PWY-6780 | hydrogen production VI |
| BioCyc:BTHE_P283-PWY | hydrogen oxidation I (aerobic) |