Pathways Knowlegdes

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Pathway DOIs Note
L-glutamate degradation VII (to butanoate)

Accession ID: BioCyc:META_GLUDEG-II-PWY
  • 10.1007/s002530100773
  • 10.1016/s0021-9258(18)65732-1
  • 10.1016/s0021-9258(18)71290-8
  • 10.1016/s0021-9258(18)71291-x
  • 10.1096/fasebj.9.9.7601336
  • 10.1128/jb.117.3.1248-1260.1974
 Buckel W. Unusual enzymes involved in five pathways of glutamate fermentation. Applied Microbiology and Biotechnology. 2001 Oct 01;57(3):263–73. doi: 10.1007/s002530100773.; Thorpe C, Kim JP. Structure and mechanism of action of the Acyl-CoA dehydrogenases 1. The FASEB Journal. 1995 Jun;9(9):718–25. doi: 10.1096/fasebj.9.9.7601336.; Buckel W, Barker HA. Two Pathways of Glutamate Fermentation by Anaerobic Bacteria. J Bacteriol. 1974 Mar;117(3):1248–60. doi: 10.1128/jb.117.3.1248-1260.1974.; Hauge JG, Crane FL, Beinert H. ON THE MECHANISM OF DEHYDROGENATION OF FATTY ACYL DERIVATIVES OF COENZYME A. Journal of Biological Chemistry. 1956 Apr;219(2):727–33. doi: 10.1016/s0021-9258(18)65732-1.; Green DE, Mii S, Mahler HR, Bock RM. STUDIES ON THE FATTY ACID OXIDIZING SYSTEM OF ANIMAL TISSUES. Journal of Biological Chemistry. 1954 Jan;206(1):1–12. doi: 10.1016/s0021-9258(18)71290-8.; MAHLER HR. Studies on the fatty acid oxidizing system of animal tissues. IV. The prosthetic group of butyryl coenzyme A dehydrogenase. J Biol Chem. 1954 Jan;206(1):13–26. PMID: 13130522.
nitrogen fixation I (ferredoxin)

Accession ID: BioCyc:META_N2FIX-PWY
  • 10.1042/bj1280655
  • 10.1128/jb.101.3.794-801.1970
 Eady RR, Smith BE, Cook KA, Postgate JR. Nitrogenase of Klebsiella pneumoniae. Purification and properties of the component proteins. Biochem J. 1972 Jul;128(3):655–75. PMID: 4344006; PMCID: PMC1173817.; Vandecasteele J, Burris RH. Purification and Properties of the Constituents of the Nitrogenase Complex from Clostridium pasteurianum. J Bacteriol. 1970 Mar;101(3):794–801. doi: 10.1128/jb.101.3.794-801.1970.
hydrogen production II

Accession ID: BioCyc:META_PWY-6758
  • 10.1099/mic.0.27159-0
 Soboh B, Linder D, Hedderich R. A multisubunit membrane-bound [NiFe] hydrogenase and an NADH-dependent Fe-only hydrogenase in the fermenting bacterium Thermoanaerobacter tengcongensis. Microbiology (Reading). 2004 Jul;150(Pt 7):2451–63. doi: 10.1099/mic.0.27159-0. PMID: 15256587.
hydrogen production I

Accession ID: BioCyc:META_PWY-6744
  • 10.1128/jb.01582-08
 Schut GJ, Adams MW. The iron-hydrogenase of Thermotoga maritima utilizes ferredoxin and NADH synergistically: a new perspective on anaerobic hydrogen production. J Bacteriol. 2009 Jul;191(13):4451–7. PMID: 19411328; PMCID: PMC2698477.
hydrogen production IV

Accession ID: BioCyc:META_PWY-6765
  • 10.1371/journal.pone.0010526
 Sun J, Hopkins RC, Jenney FE, McTernan PM, Adams MWW. Heterologous Expression and Maturation of an NADP-Dependent [NiFe]-Hydrogenase: A Key Enzyme in Biofuel Production. PLoS ONE. 2010 May 06;5(5):e10526. doi: 10.1371/journal.pone.0010526.
hydrogen production V

Accession ID: BioCyc:META_PWY-6772
  • 10.1128/aem.71.11.6762-6768.2005
 Yoshida A, Nishimura T, Kawaguchi H, Inui M, Yukawa H. Enhanced Hydrogen Production from Formic Acid by Formate Hydrogen Lyase-Overexpressing Escherichia coli Strains. Appl Environ Microbiol. 2005 Nov;71(11):6762–8. doi: 10.1128/aem.71.11.6762-6768.2005.
respiration (anaerobic)

Accession ID: BioCyc:TRYPANO_ANARESP1-PWY		 -
hydrogen oxidation I (aerobic)

Accession ID: BioCyc:SHIGELLA_P283-PWY		 -
hydrogen oxidation I (aerobic)

Accession ID: BioCyc:ECOO157_P283-PWY		 -
respiration (anaerobic)

Accession ID: BioCyc:ECOL199310_ANARESP1-PWY		 -
mixed acid fermentation

Accession ID: BioCyc:CAULO_FERMENTATION-PWY		 -
respiration (anaerobic)-- electron donors reaction list

Accession ID: BioCyc:SCO_ANARESPDON-PWY		 -
L-glutamate degradation VII (to butanoate)

Accession ID: BioCyc:FLY_GLUDEG-II-PWY		 -
respiration (anaerobic)

Accession ID: BioCyc:ECOL413997_ANARESP1-PWY		 -
respiration (anaerobic)

Accession ID: BioCyc:MOB3B_ANARESP1-PWY		 -
hydrogen production V

Accession ID: BioCyc:10403S_RAST_PWY-6772		 -
respiration (anaerobic)

Accession ID: BioCyc:THAPS_ANARESP1-PWY		 -
hydrogen oxidation I (aerobic)

Accession ID: BioCyc:CLOSSAC_P283-PWY		 -
hydrogen production VI

Accession ID: BioCyc:CLOSSAC_PWY-6780		 -
hydrogen oxidation I (aerobic)

Accession ID: BioCyc:BTHE_P283-PWY		 -