Paracoccus denitrificans

ncbi_taxid: 266 - Paracoccus denitrificans(species); all_childs: 318586, 1051075, 1302247

taxonomy name: Paracoccus denitrificans (species)
ancestor: Paracoccus (genus)

Child Taxonomy

taxonomy name rank note
Paracoccus denitrificans PD1222 strain ncbi_taxid: 318586 - Paracoccus denitrificans PD1222(strain); all_childs:
Paracoccus denitrificans SD1 strain ncbi_taxid: 1051075 - Paracoccus denitrificans SD1(strain); all_childs:
Paracoccus denitrificans JCM 21484 strain ncbi_taxid: 1302247 - Paracoccus denitrificans JCM 21484(strain); all_childs:

Enzyme Proteins

protein id name ec_number function
Q8GRC8 [UniProt] dhaa 4.1.3.41 3-hydroxy-D-aspartate aldolase
P29906 [UniProt] birA 6.3.4.15 Biotin--[acetyl-CoA-carboxylase] ligase
Q9Z462 [UniProt] groEL 5.6.1.7 Chaperonin GroEL
P54414 [UniProt] clpP 3.4.21.92 ATP-dependent Clp protease proteolytic subunit
P08305 [UniProt] ctaDI 7.1.1.9 Cytochrome c oxidase subunit 1-alpha
P98002 [UniProt] ctaDII 7.1.1.9 Cytochrome c oxidase subunit 1-beta
P08306 [UniProt] ctaC 7.1.1.9 Cytochrome c oxidase subunit 2
P06030 [UniProt] ctaE 7.1.1.9 Cytochrome c oxidase subunit 3
P77921 [UniProt] ctaH 7.1.1.9 Cytochrome c oxidase subunit 4
P08301 [UniProt] ctaB 2.5.1.141 Protoheme IX farnesyltransferase
P29898 [UniProt] moxI 1.1.2.7 Methanol dehydrogenase [cytochrome c] subunit 2
P29894 [UniProt] mauB 1.4.9.1 Methylamine dehydrogenase heavy chain
P22619 [UniProt] mauA 1.4.9.1 Methylamine dehydrogenase light chain
P12293 [UniProt] moxF 1.1.2.7 Methanol dehydrogenase [cytochrome c] subunit 1
P55932 [UniProt] ETFD_PARDE 1.5.5.1 Electron transfer flavoprotein-ubiquinone oxidoreductase
P45382 [UniProt] flhA 1.1.1.- S-(hydroxymethyl)glutathione dehydrogenase
P45382 [UniProt] flhA 1.1.1.1 S-(hydroxymethyl)glutathione dehydrogenase
P45382 [UniProt] flhA 1.1.1.284 S-(hydroxymethyl)glutathione dehydrogenase
P84468 [UniProt] ferA 1.16.1.7 Ferric reductase A
P84469 [UniProt] ferB 1.16.1.7 Ferric reductase B
Q51669 [UniProt] gfa 4.4.1.22 Glutathione-dependent formaldehyde-activating enzyme
P10772 [UniProt] adk 2.7.4.3 Adenylate kinase
P29905 [UniProt] moxY 2.7.3.- Methanol utilization control sensor protein MoxY
Q51705 [UniProt] nosZ 1.7.2.4 Nitrous-oxide reductase
P29922 [UniProt] nqo10 7.1.1.- NADH-quinone oxidoreductase chain 10
P29914 [UniProt] nqo2 7.1.1.- NADH-quinone oxidoreductase chain 2
P29923 [UniProt] nqo11 7.1.1.- NADH-quinone oxidoreductase subunit 11
P29924 [UniProt] nqo12 7.1.1.- NADH-quinone oxidoreductase chain 12
P29925 [UniProt] nqo13 7.1.1.- NADH-quinone oxidoreductase chain 13
P29915 [UniProt] nqo3 7.1.1.- NADH-quinone oxidoreductase chain 3
P29926 [UniProt] nqo14 7.1.1.- NADH-quinone oxidoreductase subunit 14
P29916 [UniProt] nqo4 7.1.1.- NADH-quinone oxidoreductase subunit 4
P29917 [UniProt] nqo5 7.1.1.- NADH-quinone oxidoreductase chain 5
P29918 [UniProt] nqo6 7.1.1.- NADH-quinone oxidoreductase subunit 6
P29919 [UniProt] nqo7 7.1.1.- NADH-quinone oxidoreductase subunit 7

Metabolites

LCMS Annotations
Literature Annotations
Metabolite Database Reference Structure
Eleutheroside A

Formula: C35H60O6
Exact Mass: 576.439
Source ID: CNP0324146.1
  • CAS Registry: 474-58-8
  • KEGG: C20785
  • LipidMAPS: LMST01040197
  • BioCYC:
Rutin

Formula: C27H30O16
Exact Mass: 610.1534
Source ID: CNP0268715.1
  • CAS Registry: 153-18-4
  • KEGG: C05625
  • LipidMAPS: LMPK12112098
  • BioCYC: RUTIN
beta-Amyrin

Formula: C30H50O
Exact Mass: 426.3861
Source ID: CNP0362107.1
  • CAS Registry: 559-70-6
  • KEGG: C08616
  • LipidMAPS: LMPR0106150015
  • BioCYC: CPD-6948
Apigenin

Formula: C15H10O5
Exact Mass: 270.0528
Source ID: CNP0251015.0
  • CAS Registry: 520-36-5
  • KEGG: C01477
  • LipidMAPS: LMPK12110005
  • BioCYC: CPD-431
Methylparaben

Formula: C8H8O3
Exact Mass: 152.0473
Source ID: CNP0259416.0
  • CAS Registry: 99-76-3
  • KEGG: D01400
  • LipidMAPS:
  • BioCYC: CPD-18691
4-Hydroxybenzoate

Formula: C7H6O3
Exact Mass: 138.0317
Source ID: CNP0253685.0
  • CAS Registry: 99-96-7
  • KEGG: C00156
  • LipidMAPS:
  • BioCYC:
Vanillate

Formula: C8H8O4
Exact Mass: 168.0423
Source ID: CNP0122021.0
  • CAS Registry: 121-34-6
  • KEGG: C06672
  • LipidMAPS:
  • BioCYC:
Indole-3-carboxylate

Formula: C9H7NO2
Exact Mass: 161.0477
Source ID: CNP0272837.0
  • CAS Registry: 771-50-6
  • KEGG: C19837
  • LipidMAPS:
  • BioCYC:
3,4-Dihydroxybenzaldehyde

Formula: C7H6O3
Exact Mass: 138.0317
Source ID: CNP0203672.0
  • CAS Registry: 139-85-5
  • KEGG: C16700
  • LipidMAPS:
  • BioCYC: CPD-7616
Octadecanoic acid

Formula: C18H36O2
Exact Mass: 284.2715
Source ID: CNP0396081.0
  • CAS Registry: 57-11-4
  • KEGG: C01530
  • LipidMAPS: LMFA01010018
  • BioCYC: STEARIC_ACID
Icosanoic acid

Formula: C20H40O2
Exact Mass: 312.3028
Source ID: CNP0374238.0
  • CAS Registry: 506-30-9
  • KEGG: C06425
  • LipidMAPS: LMFA01010020
  • BioCYC: ARACHIDIC_ACID
Oleanolic acid

Formula: C30H48O3
Exact Mass: 456.3603
Source ID: CNP0213216.3
  • CAS Registry: 508-02-1
  • KEGG: C17148
  • LipidMAPS: LMPR0106150004
  • BioCYC:
Methyl caffeate

Formula: C10H10O4
Exact Mass: 194.0579
Source ID: CNP0274791.0
  • CAS Registry: 3843-74-1
  • KEGG: C10477
  • LipidMAPS:
  • BioCYC:
desacylcynaropicrin

Formula: C15H18O4
Exact Mass: 262.1205
Source ID: CNP0269561.1
  • CAS Registry:
  • KEGG:
  • LipidMAPS:
  • BioCYC:
isolipidiol

Formula: C15H22O4
Exact Mass: 266.1518
Source ID: CNP0265617.3
  • CAS Registry:
  • KEGG:
  • LipidMAPS:
  • BioCYC:
Lupeol

Formula: C30H50O
Exact Mass: 426.3861
Source ID: CNP0269715.3
  • CAS Registry: 545-47-1
  • KEGG: C08628
  • LipidMAPS: LMPR0106130001
  • BioCYC: CPD-90
Azelaic acid

Formula: C9H16O4
Exact Mass: 188.1049
Source ID: CNP0225848.0
  • CAS Registry: 123-99-9
  • KEGG: C08261
  • LipidMAPS: LMFA01170054
  • BioCYC: CPD0-1265


Formula: C19H22O6
Exact Mass: 346.1416
Source ID: CNP0131586.1
  • CAS Registry:
  • KEGG:
  • LipidMAPS:
  • BioCYC:


Formula: C19H24O6
Exact Mass: 348.1573
Source ID: CNP0124495.1
  • CAS Registry:
  • KEGG:
  • LipidMAPS:
  • BioCYC:
Taraxasterol acetate

Formula: C32H52O2
Exact Mass: 468.3967
Source ID: CNP0242707.4
  • CAS Registry: 6426-43-3
  • KEGG:
  • LipidMAPS:
  • BioCYC:


Formula: C30H48O
Exact Mass: 424.3705
Source ID: CNP0315497.1
  • CAS Registry:
  • KEGG:
  • LipidMAPS:
  • BioCYC:
Cynaropicrin

Formula: C19H22O6
Exact Mass: 346.1416
Source ID: CNP0295445.1
  • CAS Registry: 35730-78-0
  • KEGG: C09385
  • LipidMAPS:
  • BioCYC:


Formula: C30H48O
Exact Mass: 424.3705
Source ID: CNP0287431.1
  • CAS Registry:
  • KEGG:
  • LipidMAPS:
  • BioCYC:


Formula: C29H30O9
Exact Mass: 522.189
Source ID: CNP0118131.1
  • CAS Registry:
  • KEGG:
  • LipidMAPS:
  • BioCYC:
Betulonic acid

Formula: C30H46O3
Exact Mass: 454.3447
Source ID: CNP0115283.2
  • CAS Registry: 4481-62-3
  • KEGG:
  • LipidMAPS:
  • BioCYC:
(1S,2R)-1-(4-Hydroxy-3-methoxyphenyl)-2-[4-[(E)-3-hydroxyprop-1-enyl]-2-methoxyphenoxy]propane-1,3-diol

Formula: C20H24O7
Exact Mass: 376.1522
Source ID: CNP0286699.2
  • CAS Registry: 890317-92-7
  • KEGG:
  • LipidMAPS:
  • BioCYC:
erythro-Guaiacylglycerol

Formula: C20H26O7
Exact Mass: 378.1678
Source ID: CNP0176674.1
  • CAS Registry:
  • KEGG:
  • LipidMAPS:
  • BioCYC:


Formula: C20H20O8
Exact Mass: 388.1158
Source ID: CNP0224550.1
  • CAS Registry:
  • KEGG:
  • LipidMAPS:
  • BioCYC:
105242-48-6

Formula: C20H28O7
Exact Mass: 380.1835
Source ID: CNP0171450.1
  • CAS Registry:
  • KEGG:
  • LipidMAPS:
  • BioCYC:
alpha-Tocoquinone

Formula: C29H50O3
Exact Mass: 446.376
Source ID: CNP0264529.1
  • CAS Registry: 7559-04-8
  • KEGG:
  • LipidMAPS:
  • BioCYC:


Formula: C20H24O7
Exact Mass: 376.1522
Source ID: CNP0205702.1
  • CAS Registry:
  • KEGG:
  • LipidMAPS:
  • BioCYC:


Formula: C19H24O7
Exact Mass: 364.1522
Source ID: CNP0142606.1
  • CAS Registry:
  • KEGG:
  • LipidMAPS:
  • BioCYC:
Vulgarin

Formula: C15H20O4
Exact Mass: 264.1362
Source ID: CNP0300254.1
  • CAS Registry: 3162-56-9
  • KEGG: C09600
  • LipidMAPS:
  • BioCYC:


Formula: C15H26O3
Exact Mass: 254.1882
Source ID: CNP0244082.1
  • CAS Registry:
  • KEGG:
  • LipidMAPS:
  • BioCYC:
Methyl indole-3-carboxylate

Formula: C10H9NO2
Exact Mass: 175.0633
Source ID: CNP0153897.0
  • CAS Registry: 942-24-5
  • KEGG:
  • LipidMAPS:
  • BioCYC: CPDQT-423


Formula: C35H70O
Exact Mass: 506.5426
Source ID: CNP0180174.1
  • CAS Registry:
  • KEGG:
  • LipidMAPS:
  • BioCYC:
Hemistepsin

Formula: C19H22O6
Exact Mass: 346.1416
Source ID: CNP0209038.1
  • CAS Registry:
  • KEGG:
  • LipidMAPS:
  • BioCYC: