Paracoccus denitrificans
ncbi_taxid: 266 - Paracoccus denitrificans(species); all_childs: 318586, 1051075, 1302247
taxonomy name: Paracoccus denitrificans (species)
ancestor: Paracoccus (genus)
Child Taxonomy
| taxonomy name | rank | note |
|---|---|---|
| Paracoccus denitrificans PD1222 | strain | ncbi_taxid: 318586 - Paracoccus denitrificans PD1222(strain); all_childs: |
| Paracoccus denitrificans SD1 | strain | ncbi_taxid: 1051075 - Paracoccus denitrificans SD1(strain); all_childs: |
| Paracoccus denitrificans JCM 21484 | strain | ncbi_taxid: 1302247 - Paracoccus denitrificans JCM 21484(strain); all_childs: |
Enzyme Proteins
| protein id | name | ec_number | function |
|---|---|---|---|
| Q8GRC8 [UniProt] | dhaa | 4.1.3.41 | 3-hydroxy-D-aspartate aldolase |
| P29906 [UniProt] | birA | 6.3.4.15 | Biotin--[acetyl-CoA-carboxylase] ligase |
| Q9Z462 [UniProt] | groEL | 5.6.1.7 | Chaperonin GroEL |
| P54414 [UniProt] | clpP | 3.4.21.92 | ATP-dependent Clp protease proteolytic subunit |
| P08305 [UniProt] | ctaDI | 7.1.1.9 | Cytochrome c oxidase subunit 1-alpha |
| P98002 [UniProt] | ctaDII | 7.1.1.9 | Cytochrome c oxidase subunit 1-beta |
| P08306 [UniProt] | ctaC | 7.1.1.9 | Cytochrome c oxidase subunit 2 |
| P06030 [UniProt] | ctaE | 7.1.1.9 | Cytochrome c oxidase subunit 3 |
| P77921 [UniProt] | ctaH | 7.1.1.9 | Cytochrome c oxidase subunit 4 |
| P08301 [UniProt] | ctaB | 2.5.1.141 | Protoheme IX farnesyltransferase |
| P29898 [UniProt] | moxI | 1.1.2.7 | Methanol dehydrogenase [cytochrome c] subunit 2 |
| P29894 [UniProt] | mauB | 1.4.9.1 | Methylamine dehydrogenase heavy chain |
| P22619 [UniProt] | mauA | 1.4.9.1 | Methylamine dehydrogenase light chain |
| P12293 [UniProt] | moxF | 1.1.2.7 | Methanol dehydrogenase [cytochrome c] subunit 1 |
| P55932 [UniProt] | ETFD_PARDE | 1.5.5.1 | Electron transfer flavoprotein-ubiquinone oxidoreductase |
| P45382 [UniProt] | flhA | 1.1.1.- | S-(hydroxymethyl)glutathione dehydrogenase |
| P45382 [UniProt] | flhA | 1.1.1.1 | S-(hydroxymethyl)glutathione dehydrogenase |
| P45382 [UniProt] | flhA | 1.1.1.284 | S-(hydroxymethyl)glutathione dehydrogenase |
| P84468 [UniProt] | ferA | 1.16.1.7 | Ferric reductase A |
| P84469 [UniProt] | ferB | 1.16.1.7 | Ferric reductase B |
| Q51669 [UniProt] | gfa | 4.4.1.22 | Glutathione-dependent formaldehyde-activating enzyme |
| P10772 [UniProt] | adk | 2.7.4.3 | Adenylate kinase |
| P29905 [UniProt] | moxY | 2.7.3.- | Methanol utilization control sensor protein MoxY |
| Q51705 [UniProt] | nosZ | 1.7.2.4 | Nitrous-oxide reductase |
| P29922 [UniProt] | nqo10 | 7.1.1.- | NADH-quinone oxidoreductase chain 10 |
| P29914 [UniProt] | nqo2 | 7.1.1.- | NADH-quinone oxidoreductase chain 2 |
| P29923 [UniProt] | nqo11 | 7.1.1.- | NADH-quinone oxidoreductase subunit 11 |
| P29924 [UniProt] | nqo12 | 7.1.1.- | NADH-quinone oxidoreductase chain 12 |
| P29925 [UniProt] | nqo13 | 7.1.1.- | NADH-quinone oxidoreductase chain 13 |
| P29915 [UniProt] | nqo3 | 7.1.1.- | NADH-quinone oxidoreductase chain 3 |
| P29926 [UniProt] | nqo14 | 7.1.1.- | NADH-quinone oxidoreductase subunit 14 |
| P29916 [UniProt] | nqo4 | 7.1.1.- | NADH-quinone oxidoreductase subunit 4 |
| P29917 [UniProt] | nqo5 | 7.1.1.- | NADH-quinone oxidoreductase chain 5 |
| P29918 [UniProt] | nqo6 | 7.1.1.- | NADH-quinone oxidoreductase subunit 6 |
| P29919 [UniProt] | nqo7 | 7.1.1.- | NADH-quinone oxidoreductase subunit 7 |
Metabolites
LCMS Annotations
Literature Annotations
| Metabolite | Database Reference | Structure |
|---|---|---|
| Eleutheroside A Formula: C35H60O6 Exact Mass: 576.439 Source ID: CNP0324146.1 |
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| Rutin Formula: C27H30O16 Exact Mass: 610.1534 Source ID: CNP0268715.1 |
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| beta-Amyrin Formula: C30H50O Exact Mass: 426.3861 Source ID: CNP0362107.1 |
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| Apigenin Formula: C15H10O5 Exact Mass: 270.0528 Source ID: CNP0251015.0 |
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| Methylparaben Formula: C8H8O3 Exact Mass: 152.0473 Source ID: CNP0259416.0 |
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| 4-Hydroxybenzoate Formula: C7H6O3 Exact Mass: 138.0317 Source ID: CNP0253685.0 |
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| Vanillate Formula: C8H8O4 Exact Mass: 168.0423 Source ID: CNP0122021.0 |
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| Indole-3-carboxylate Formula: C9H7NO2 Exact Mass: 161.0477 Source ID: CNP0272837.0 |
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| 3,4-Dihydroxybenzaldehyde Formula: C7H6O3 Exact Mass: 138.0317 Source ID: CNP0203672.0 |
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| Octadecanoic acid Formula: C18H36O2 Exact Mass: 284.2715 Source ID: CNP0396081.0 |
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| Icosanoic acid Formula: C20H40O2 Exact Mass: 312.3028 Source ID: CNP0374238.0 |
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| Oleanolic acid Formula: C30H48O3 Exact Mass: 456.3603 Source ID: CNP0213216.3 |
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| Methyl caffeate Formula: C10H10O4 Exact Mass: 194.0579 Source ID: CNP0274791.0 |
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| desacylcynaropicrin Formula: C15H18O4 Exact Mass: 262.1205 Source ID: CNP0269561.1 |
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| isolipidiol Formula: C15H22O4 Exact Mass: 266.1518 Source ID: CNP0265617.3 |
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| Lupeol Formula: C30H50O Exact Mass: 426.3861 Source ID: CNP0269715.3 |
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| Azelaic acid Formula: C9H16O4 Exact Mass: 188.1049 Source ID: CNP0225848.0 |
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Formula: C19H22O6 Exact Mass: 346.1416 Source ID: CNP0131586.1 |
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Formula: C19H24O6 Exact Mass: 348.1573 Source ID: CNP0124495.1 |
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| Taraxasterol acetate Formula: C32H52O2 Exact Mass: 468.3967 Source ID: CNP0242707.4 |
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Formula: C30H48O Exact Mass: 424.3705 Source ID: CNP0315497.1 |
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| Cynaropicrin Formula: C19H22O6 Exact Mass: 346.1416 Source ID: CNP0295445.1 |
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Formula: C30H48O Exact Mass: 424.3705 Source ID: CNP0287431.1 |
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Formula: C29H30O9 Exact Mass: 522.189 Source ID: CNP0118131.1 |
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| Betulonic acid Formula: C30H46O3 Exact Mass: 454.3447 Source ID: CNP0115283.2 |
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| (1S,2R)-1-(4-Hydroxy-3-methoxyphenyl)-2-[4-[(E)-3-hydroxyprop-1-enyl]-2-methoxyphenoxy]propane-1,3-diol Formula: C20H24O7 Exact Mass: 376.1522 Source ID: CNP0286699.2 |
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| erythro-Guaiacylglycerol Formula: C20H26O7 Exact Mass: 378.1678 Source ID: CNP0176674.1 |
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Formula: C20H20O8 Exact Mass: 388.1158 Source ID: CNP0224550.1 |
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| 105242-48-6 Formula: C20H28O7 Exact Mass: 380.1835 Source ID: CNP0171450.1 |
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| alpha-Tocoquinone Formula: C29H50O3 Exact Mass: 446.376 Source ID: CNP0264529.1 |
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Formula: C20H24O7 Exact Mass: 376.1522 Source ID: CNP0205702.1 |
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Formula: C19H24O7 Exact Mass: 364.1522 Source ID: CNP0142606.1 |
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| Vulgarin Formula: C15H20O4 Exact Mass: 264.1362 Source ID: CNP0300254.1 |
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Formula: C15H26O3 Exact Mass: 254.1882 Source ID: CNP0244082.1 |
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| Methyl indole-3-carboxylate Formula: C10H9NO2 Exact Mass: 175.0633 Source ID: CNP0153897.0 |
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Formula: C35H70O Exact Mass: 506.5426 Source ID: CNP0180174.1 |
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| Hemistepsin Formula: C19H22O6 Exact Mass: 346.1416 Source ID: CNP0209038.1 |
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