Pathways Knowlegdes

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Pathway DOIs Note
inositol pyrophosphates biosynthesis

Accession ID: BioCyc:HUMAN_PWY-6369
  • 10.1074/jbc.275.17.12730
 Caffrey JJ, Safrany ST, Yang X, Shears SB. Discovery of molecular and catalytic diversity among human diphosphoinositol-polyphosphate phosphohydrolases. An expanding Nudt family. J Biol Chem. 2000 Apr 28;275(17):12730–6. doi: 10.1074/jbc.275.17.12730. PMID: 10777568.
superpathway of inositol phosphate compounds

Accession ID: BioCyc:META_PWY-6371
  • 10.1006/scdb.1997.0220
  • 10.1016/j.bbalip.2007.01.015
  • 10.1016/s0960-9822(01)00501-2
  • 10.1073/pnas.0509740102
  • 10.1074/jbc.m805686200
  • 10.1093/emboj/cdf522
 Lin H, Fridy PC, Ribeiro AA, Choi JH, Barma DK, Vogel G, Falck JR, Shears SB, York JD, Mayr GW. Structural Analysis and Detection of Biological Inositol Pyrophosphates Reveal That the Family of VIP/Diphosphoinositol Pentakisphosphate Kinases Are 1/3-Kinases. Journal of Biological Chemistry. 2009 Jan;284(3):1863–72. doi: 10.1074/jbc.m805686200.; Strahl T, Thorner J. Synthesis and function of membrane phosphoinositides in budding yeast, Saccharomyces cerevisiae. Biochimica et Biophysica Acta (BBA) - Molecular and Cell Biology of Lipids. 2007 Mar;1771(3):353–404. doi: 10.1016/j.bbalip.2007.01.015.; Ungewickell A, Hugge C, Kisseleva M, Chang SC, Zou J, Feng Y, Galyov EE, Wilson M, Majerus PW. The identification and characterization of two phosphatidylinositol-4,5-bisphosphate 4-phosphatases. Proc Natl Acad Sci U S A. 2005 Dec 27;102(52):18854–9. PMID: 16365287; PMCID: PMC1323219.; Niebuhr K, Giuriato S, Pedron T, Philpott DJ, Gaits F, Sable J, Sheetz MP, Parsot C, Sansonetti PJ, Payrastre B. Conversion of PtdIns(4,5)P(2) into PtdIns(5)P by the S.flexneri effector IpgD reorganizes host cell morphology. EMBO J. 2002 Oct 01;21(19):5069–78. PMID: 12356723; PMCID: PMC129044.; Walker DM, Urbé S, Dove SK, Tenza D, Raposo G, Clague MJ. Characterization of MTMR3. an inositol lipid 3-phosphatase with novel substrate specificity. Curr Biol. 2001 Oct 16;11(20):1600–5. doi: 10.1016/s0960-9822(01)00501-2. PMID: 11676921.; Zhang X, Majerus PW. Phosphatidylinositol signalling reactions. Seminars in Cell & Developmental Biology. 1998 Apr;9(2):153–60. doi: 10.1006/scdb.1997.0220.
inositol phosphate biosynthesis

Accession ID: BioCyc:YEAST_PWY3O-402
  • 10.1007/s00018-005-5446-z
  • 10.1016/j.bbalip.2006.04.014
  • 10.1074/jbc.m202206200
  • 10.1126/science.1139099
 Mulugu S, Bai W, Fridy PC, Bastidas RJ, Otto JC, Dollins DE, Haystead TA, Ribeiro AA, York JD. A conserved family of enzymes that phosphorylate inositol hexakisphosphate. Science. 2007 Apr 06;316(5821):106–9. doi: 10.1126/science.1139099. PMID: 17412958.; York JD. Regulation of nuclear processes by inositol polyphosphates. Biochimica et Biophysica Acta (BBA) - Molecular and Cell Biology of Lipids. 2006 May;1761(5-6):552–9. doi: 10.1016/j.bbalip.2006.04.014.; Bennett M, Onnebo SMN, Azevedo C, Saiardi A. Inositol pyrophosphates: metabolism and signaling. Cellular and Molecular Life Sciences. 2006 Jan 25;63(5):552. doi: 10.1007/s00018-005-5446-z.; Dubois E, Scherens B, Vierendeels F, Ho MMW, Messenguy F, Shears SB. In Saccharomyces cerevisiae, the Inositol Polyphosphate Kinase Activity of Kcs1p Is Required for Resistance to Salt Stress, Cell Wall Integrity, and Vacuolar Morphogenesis. Journal of Biological Chemistry. 2002 Jun;277(26):23755–63. doi: 10.1074/jbc.m202206200.
inositol pyrophosphates biosynthesis

Accession ID: BioCyc:ARA_PWY-6369		 -
inositol diphosphates biosynthesis

Accession ID: BioCyc:META_PWY-6369
  • 10.1074/jbc.275.17.12730
  • 10.1074/jbc.m805686200
 Lin H, Fridy PC, Ribeiro AA, Choi JH, Barma DK, Vogel G, Falck JR, Shears SB, York JD, Mayr GW. Structural Analysis and Detection of Biological Inositol Pyrophosphates Reveal That the Family of VIP/Diphosphoinositol Pentakisphosphate Kinases Are 1/3-Kinases. Journal of Biological Chemistry. 2009 Jan;284(3):1863–72. doi: 10.1074/jbc.m805686200.; Caffrey JJ, Safrany ST, Yang X, Shears SB. Discovery of molecular and catalytic diversity among human diphosphoinositol-polyphosphate phosphohydrolases. An expanding Nudt family. J Biol Chem. 2000 Apr 28;275(17):12730–6. doi: 10.1074/jbc.275.17.12730. PMID: 10777568.
inositol pyrophosphates biosynthesis

Accession ID: BioCyc:YEAST_PWY-6369		 -
superpathway of inositol phosphate compounds

Accession ID: BioCyc:HUMAN_PWY-6371		 -
inositol diphosphates biosynthesis

Accession ID: PlantCyc:SPIRODELA_PWY-6369		 -
inositol diphosphates biosynthesis

Accession ID: PlantCyc:AHYPOCHONDRIACUS_PWY-6369		 -
inositol diphosphates biosynthesis

Accession ID: PlantCyc:SWEETORANGE_PWY-6369		 -
inositol diphosphates biosynthesis

Accession ID: PlantCyc:SWITCHGRASS_PWY-6369		 -
inositol diphosphates biosynthesis

Accession ID: PlantCyc:TOMATO_PWY-6369		 -
inositol diphosphates biosynthesis

Accession ID: PlantCyc:AMBORELLA_PWY-6369		 -
inositol diphosphates biosynthesis

Accession ID: PlantCyc:BRACHYPODIUM_PWY-6369		 -
inositol diphosphates biosynthesis

Accession ID: PlantCyc:CACUMINATA_PWY-6369		 -
inositol diphosphates biosynthesis

Accession ID: PlantCyc:CARROT_PWY-6369		 -
inositol diphosphates biosynthesis

Accession ID: PlantCyc:SACREDLOTUS_PWY-6369		 -
inositol diphosphates biosynthesis

Accession ID: PlantCyc:CGRANDIFLORA_PWY-6369		 -
inositol diphosphates biosynthesis

Accession ID: PlantCyc:CROSEUS_PWY-6369		 -
inositol diphosphates biosynthesis

Accession ID: PlantCyc:MOSOBAMBOO_PWY-6369		 -