Pathways Knowlegdes

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Pathway DOIs Note
selenate reduction

Accession ID: BioCyc:META_PWY-6932
  • 10.1007/s11120-005-5222-9
  • 10.1021/bi00679a014
  • 10.1023/a:1009290213301
  • 10.1042/bj1270237
  • 10.1042/bj1630521
  • 10.1073/pnas.95.14.8404
  • 10.1104/pp.119.1.123
  • 10.1104/pp.67.2.316
  • 10.1111/j.1365-313x.2005.02413.x
 Sors TG, Ellis DR, Salt DE. Selenium uptake, translocation, assimilation and metabolic fate in plants. Photosynth Res. 2005 Dec;86(3):373–89. doi: 10.1007/s11120-005-5222-9. PMID: 16307305.; Sors TG, Ellis DR, Na GN, Lahner B, Lee S, Leustek T, Pickering IJ, Salt DE. Analysis of sulfur and selenium assimilation in Astragalus plants with varying capacities to accumulate selenium. The Plant Journal. 2005 May 05;42(6):785–97. doi: 10.1111/j.1365-313x.2005.02413.x.; Pilon-Smits EAH, Hwang S, Mel Lytle C, Zhu Y, Tai JC, Bravo RC, Chen Y, Leustek T, Terry N. Overexpression of ATP Sulfurylase in Indian Mustard Leads to Increased Selenate Uptake, Reduction, and Tolerance1. 1999 Jan 01;119(1):123–32. doi: 10.1104/pp.119.1.123.; Turner RJ, Weiner JH, Taylor DE. Selenium metabolism in Escherichia coli. Biometals. 1998 Sep;11(3):223–7. doi: 10.1023/a:1009290213301. PMID: 9850565.; Bick J, Åslund F, Chen Y, Leustek T. Glutaredoxin function for the carboxyl-terminal domain of the plant-type 5'-adenylylsulfate reductase. Proc. Natl. Acad. Sci. U.S.A. 1998 Jul 07;95(14):8404–9. doi: 10.1073/pnas.95.14.8404.; Burnell JN. Selenium Metabolism in Neptunia amplexicaulis. Plant Physiol. 1981 Feb 01;67(2):316–24. doi: 10.1104/pp.67.2.316.; Dilworth GL, Bandurski RS. Activation of selenate by adenosine 5'-triphosphate sulphurylase from Saccharomyces cerevisiae. Biochem J. 1977 Jun 01;163(3):521–9. PMID: 328009; PMCID: PMC1164733.; Hsieh HS, Ganther HE. Acid-volatile selenium formation catalyzed by glutathione reductase. Biochemistry. 1975 Apr 22;14(8):1632–6. doi: 10.1021/bi00679a014. PMID: 235962.; Shaw WH, Anderson JW. Purification, properties and substrate specificity of adenosine triphosphate sulphurylase from spinach leaf tissue. Biochem J. 1972 Mar;127(1):237–47. PMID: 5073745; PMCID: PMC1178578.
selenate reduction

Accession ID: BioCyc:MTBH37RV_PWY-6932		 -
selenate reduction

Accession ID: BioCyc:MTBCDC1551_PWY-6932		 -
selenate reduction

Accession ID: BioCyc:CORYNE_PWY-6932		 -
selenate reduction

Accession ID: BioCyc:DESPIGER_PWY-6932		 -
tetrathionate reductiuon II (to trithionate)

Accession ID: BioCyc:META_PWY-5359
  • 10.1016/s1389-1723(00)80109-7
 Ng KY, Kamimura K, Sugio T. Production of hydrogen sulfide from tetrathionate by the iron-oxidizing bacterium Thiobacillus ferrooxidans NASF-1. Journal of Bioscience and Bioengineering. 2000 Jan;90(2):193–8. doi: 10.1016/s1389-1723(00)80109-7.
selenate reduction

Accession ID: BioCyc:ANTHRA_PWY-6932		 -
superpathway of seleno-compound metabolism

Accession ID: BioCyc:META_PWY-6395
  • 10.1007/s11120-005-5222-9
  • 10.1016/j.phytochem.2007.02.007
  • 10.1016/s0960-894x(00)00498-4
  • 10.1021/bi00679a014
  • 10.1023/a:1009290213301
  • 10.1042/bj1270237
  • 10.1042/bj1630521
  • 10.1080/16226510490454786
  • 10.1104/pp.001693
  • 10.1104/pp.104.056549
  • 10.1104/pp.119.1.123
  • 10.1104/pp.122.4.1281
  • 10.1104/pp.67.2.316
  • 10.1111/j.1365-313x.2005.02413.x
  • 10.1146/annurev.arplant.51.1.401
 Lyi SM, Zhou X, Kochian LV, Li L. Biochemical and molecular characterization of the homocysteine S-methyltransferase from broccoli (Brassica oleracea var. italica). Phytochemistry. 2007 Apr;68(8):1112–9. doi: 10.1016/j.phytochem.2007.02.007. PMID: 17391716.; Sors TG, Ellis DR, Salt DE. Selenium uptake, translocation, assimilation and metabolic fate in plants. Photosynth Res. 2005 Dec;86(3):373–89. doi: 10.1007/s11120-005-5222-9. PMID: 16307305.; Sors TG, Ellis DR, Na GN, Lahner B, Lee S, Leustek T, Pickering IJ, Salt DE. Analysis of sulfur and selenium assimilation in Astragalus plants with varying capacities to accumulate selenium. The Plant Journal. 2005 May 05;42(6):785–97. doi: 10.1111/j.1365-313x.2005.02413.x.; Lyi SM, Heller LI, Rutzke M, Welch RM, Kochian LV, Li L. Molecular and biochemical characterization of the selenocysteine Se-methyltransferase gene and Se-methylselenocysteine synthesis in broccoli. Plant Physiol. 2005 May;138(1):409–20. PMID: 15863700; PMCID: PMC1104194.; Huysen T, Terry N, Pilon-Smits EAH. Exploring the Selenium Phytoremediation Potential of Transgenic Indian Mustard Overexpressing ATP Sulfurylase or Cystathionine-?-Synthase. International Journal of Phytoremediation. 2004 Apr;6(2):111–8. doi: 10.1080/16226510490454786.; Tagmount A, Berken A, Terry N. An Essential Role ofS-Adenosyl-l-Methionine:l-MethionineS-Methyltransferase in Selenium Volatilization by Plants. Methylation of Selenomethionine to Selenium-Methyl-l-Selenium- Methionine, the Precursor of Volatile Selenium. 2002 Oct 01;130(2):847–56. doi: 10.1104/pp.001693.; Zhou ZS, Smith AE, Matthews RG. l-selenohomocysteine: one-step synthesis from l-selenomethionine and kinetic analysis as substrate for methionine synthases. Bioorganic & Medicinal Chemistry Letters. 2000 Nov;10(21):2471–5. doi: 10.1016/s0960-894x(00)00498-4.; Terry N, Zayed AM, de Souza MP, Tarun AS. SELENIUM INHIGHERPLANTS. Annu. Rev. Plant. Physiol. Plant. Mol. Biol. 2000 Jun;51(1):401–32. doi: 10.1146/annurev.arplant.51.1.401.; de Souza MP, Lytle CM, Mulholland MM, Otte ML, Terry N. Selenium assimilation and volatilization from dimethylselenoniopropionate by Indian mustard. Plant Physiol. 2000 Apr;122(4):1281–8. PMID: 10759525; PMCID: PMC58964.; Pilon-Smits EAH, Hwang S, Mel Lytle C, Zhu Y, Tai JC, Bravo RC, Chen Y, Leustek T, Terry N. Overexpression of ATP Sulfurylase in Indian Mustard Leads to Increased Selenate Uptake, Reduction, and Tolerance1. 1999 Jan 01;119(1):123–32. doi: 10.1104/pp.119.1.123.; Turner RJ, Weiner JH, Taylor DE. Selenium metabolism in Escherichia coli. Biometals. 1998 Sep;11(3):223–7. doi: 10.1023/a:1009290213301. PMID: 9850565.; Burnell JN. Selenium Metabolism in Neptunia amplexicaulis. Plant Physiol. 1981 Feb 01;67(2):316–24. doi: 10.1104/pp.67.2.316.; Dilworth GL, Bandurski RS. Activation of selenate by adenosine 5'-triphosphate sulphurylase from Saccharomyces cerevisiae. Biochem J. 1977 Jun 01;163(3):521–9. PMID: 328009; PMCID: PMC1164733.; Hsieh HS, Ganther HE. Acid-volatile selenium formation catalyzed by glutathione reductase. Biochemistry. 1975 Apr 22;14(8):1632–6. doi: 10.1021/bi00679a014. PMID: 235962.; Shaw WH, Anderson JW. Purification, properties and substrate specificity of adenosine triphosphate sulphurylase from spinach leaf tissue. Biochem J. 1972 Mar;127(1):237–47. PMID: 5073745; PMCID: PMC1178578.
selenate reduction

Accession ID: PlantCyc:ARA_PWY-6932
  • 10.1007/s11120-005-5222-9
  • 10.1021/bi00679a014
  • 10.1023/a:1009290213301
  • 10.1042/bj1270237
  • 10.1042/bj1630521
  • 10.1073/pnas.95.14.8404
  • 10.1104/pp.119.1.123
  • 10.1104/pp.67.2.316
  • 10.1111/j.1365-313x.2005.02413.x
 Sors TG, Ellis DR, Salt DE. Selenium uptake, translocation, assimilation and metabolic fate in plants. Photosynth Res. 2005 Dec;86(3):373–89. doi: 10.1007/s11120-005-5222-9. PMID: 16307305.; Sors TG, Ellis DR, Na GN, Lahner B, Lee S, Leustek T, Pickering IJ, Salt DE. Analysis of sulfur and selenium assimilation in Astragalus plants with varying capacities to accumulate selenium. The Plant Journal. 2005 May 05;42(6):785–97. doi: 10.1111/j.1365-313x.2005.02413.x.; Pilon-Smits EAH, Hwang S, Mel Lytle C, Zhu Y, Tai JC, Bravo RC, Chen Y, Leustek T, Terry N. Overexpression of ATP Sulfurylase in Indian Mustard Leads to Increased Selenate Uptake, Reduction, and Tolerance1. 1999 Jan 01;119(1):123–32. doi: 10.1104/pp.119.1.123.; Turner RJ, Weiner JH, Taylor DE. Selenium metabolism in Escherichia coli. Biometals. 1998 Sep;11(3):223–7. doi: 10.1023/a:1009290213301. PMID: 9850565.; Bick J, Åslund F, Chen Y, Leustek T. Glutaredoxin function for the carboxyl-terminal domain of the plant-type 5'-adenylylsulfate reductase. Proc. Natl. Acad. Sci. U.S.A. 1998 Jul 07;95(14):8404–9. doi: 10.1073/pnas.95.14.8404.; Burnell JN. Selenium Metabolism in Neptunia amplexicaulis. Plant Physiol. 1981 Feb 01;67(2):316–24. doi: 10.1104/pp.67.2.316.; Dilworth GL, Bandurski RS. Activation of selenate by adenosine 5'-triphosphate sulphurylase from Saccharomyces cerevisiae. Biochem J. 1977 Jun 01;163(3):521–9. PMID: 328009; PMCID: PMC1164733.; Hsieh HS, Ganther HE. Acid-volatile selenium formation catalyzed by glutathione reductase. Biochemistry. 1975 Apr 22;14(8):1632–6. doi: 10.1021/bi00679a014. PMID: 235962.; Shaw WH, Anderson JW. Purification, properties and substrate specificity of adenosine triphosphate sulphurylase from spinach leaf tissue. Biochem J. 1972 Mar;127(1):237–47. PMID: 5073745; PMCID: PMC1178578.
superpathway of seleno-compound metabolism

Accession ID: PlantCyc:BOLERACEA_CAPITATA_PWY-6395
  • 10.1007/s11120-005-5222-9
  • 10.1016/j.phytochem.2007.02.007
  • 10.1042/bj1270237
  • 10.1042/bj1630521
  • 10.1104/pp.001693
  • 10.1104/pp.119.1.123
  • 10.1104/pp.122.4.1281
  • 10.1104/pp.67.2.316
  • 10.1111/j.1365-313x.2005.02413.x
  • 10.1146/annurev.arplant.51.1.401
 Lyi SM, Zhou X, Kochian LV, Li L. Biochemical and molecular characterization of the homocysteine S-methyltransferase from broccoli (Brassica oleracea var. italica). Phytochemistry. 2007 Apr;68(8):1112–9. doi: 10.1016/j.phytochem.2007.02.007. PMID: 17391716.; Sors TG, Ellis DR, Salt DE. Selenium uptake, translocation, assimilation and metabolic fate in plants. Photosynth Res. 2005 Dec;86(3):373–89. doi: 10.1007/s11120-005-5222-9. PMID: 16307305.; Sors TG, Ellis DR, Na GN, Lahner B, Lee S, Leustek T, Pickering IJ, Salt DE. Analysis of sulfur and selenium assimilation in Astragalus plants with varying capacities to accumulate selenium. The Plant Journal. 2005 May 05;42(6):785–97. doi: 10.1111/j.1365-313x.2005.02413.x.; Tagmount A, Berken A, Terry N. An Essential Role ofS-Adenosyl-l-Methionine:l-MethionineS-Methyltransferase in Selenium Volatilization by Plants. Methylation of Selenomethionine to Selenium-Methyl-l-Selenium- Methionine, the Precursor of Volatile Selenium. 2002 Oct 01;130(2):847–56. doi: 10.1104/pp.001693.; Terry N, Zayed AM, de Souza MP, Tarun AS. SELENIUM INHIGHERPLANTS. Annu. Rev. Plant. Physiol. Plant. Mol. Biol. 2000 Jun;51(1):401–32. doi: 10.1146/annurev.arplant.51.1.401.; de Souza MP, Lytle CM, Mulholland MM, Otte ML, Terry N. Selenium assimilation and volatilization from dimethylselenoniopropionate by Indian mustard. Plant Physiol. 2000 Apr;122(4):1281–8. PMID: 10759525; PMCID: PMC58964.; Pilon-Smits EAH, Hwang S, Mel Lytle C, Zhu Y, Tai JC, Bravo RC, Chen Y, Leustek T, Terry N. Overexpression of ATP Sulfurylase in Indian Mustard Leads to Increased Selenate Uptake, Reduction, and Tolerance1. 1999 Jan 01;119(1):123–32. doi: 10.1104/pp.119.1.123.; Burnell JN. Selenium Metabolism in Neptunia amplexicaulis. Plant Physiol. 1981 Feb 01;67(2):316–24. doi: 10.1104/pp.67.2.316.; Dilworth GL, Bandurski RS. Activation of selenate by adenosine 5'-triphosphate sulphurylase from Saccharomyces cerevisiae. Biochem J. 1977 Jun 01;163(3):521–9. PMID: 328009; PMCID: PMC1164733.; Shaw WH, Anderson JW. Purification, properties and substrate specificity of adenosine triphosphate sulphurylase from spinach leaf tissue. Biochem J. 1972 Mar;127(1):237–47. PMID: 5073745; PMCID: PMC1178578.
selenate reduction

Accession ID: PlantCyc:CARNATION_PWY-6932		 -
selenate reduction

Accession ID: PlantCyc:CGRANDIFLORA_PWY-6932		 -
selenate reduction

Accession ID: PlantCyc:CLEMENTINE_PWY-6932		 -
selenate reduction

Accession ID: PlantCyc:SUGARBEET_PWY-6932		 -
selenate reduction

Accession ID: PlantCyc:ALYRATA_PWY-6932		 -
selenate reduction

Accession ID: PlantCyc:BOLERACEA_CAPITATA_PWY-6932		 -
selenate reduction

Accession ID: PlantCyc:KLAXIFLORA_PWY-6932		 -
selenate reduction

Accession ID: PlantCyc:MOSS_PWY-6932		 -
selenate reduction

Accession ID: PlantCyc:MPOLYMORPHA_PWY-6932		 -
superpathway of seleno-compound metabolism

Accession ID: PlantCyc:ARA_PWY-6395
  • 10.1007/s11120-005-5222-9
  • 10.1016/j.phytochem.2007.02.007
  • 10.1016/s0960-894x(00)00498-4
  • 10.1021/bi00679a014
  • 10.1023/a:1009290213301
  • 10.1042/bj1270237
  • 10.1042/bj1630521
  • 10.1104/pp.001693
  • 10.1104/pp.104.056549
  • 10.1104/pp.119.1.123
  • 10.1104/pp.122.4.1281
  • 10.1104/pp.67.2.316
  • 10.1111/j.1365-313x.2005.02413.x
  • 10.1146/annurev.arplant.51.1.401
 Lyi SM, Zhou X, Kochian LV, Li L. Biochemical and molecular characterization of the homocysteine S-methyltransferase from broccoli (Brassica oleracea var. italica). Phytochemistry. 2007 Apr;68(8):1112–9. doi: 10.1016/j.phytochem.2007.02.007. PMID: 17391716.; Sors TG, Ellis DR, Salt DE. Selenium uptake, translocation, assimilation and metabolic fate in plants. Photosynth Res. 2005 Dec;86(3):373–89. doi: 10.1007/s11120-005-5222-9. PMID: 16307305.; Sors TG, Ellis DR, Na GN, Lahner B, Lee S, Leustek T, Pickering IJ, Salt DE. Analysis of sulfur and selenium assimilation in Astragalus plants with varying capacities to accumulate selenium. The Plant Journal. 2005 May 05;42(6):785–97. doi: 10.1111/j.1365-313x.2005.02413.x.; Lyi SM, Heller LI, Rutzke M, Welch RM, Kochian LV, Li L. Molecular and biochemical characterization of the selenocysteine Se-methyltransferase gene and Se-methylselenocysteine synthesis in broccoli. Plant Physiol. 2005 May;138(1):409–20. PMID: 15863700; PMCID: PMC1104194.; Tagmount A, Berken A, Terry N. An Essential Role ofS-Adenosyl-l-Methionine:l-MethionineS-Methyltransferase in Selenium Volatilization by Plants. Methylation of Selenomethionine to Selenium-Methyl-l-Selenium- Methionine, the Precursor of Volatile Selenium. 2002 Oct 01;130(2):847–56. doi: 10.1104/pp.001693.; Zhou ZS, Smith AE, Matthews RG. l-selenohomocysteine: one-step synthesis from l-selenomethionine and kinetic analysis as substrate for methionine synthases. Bioorganic & Medicinal Chemistry Letters. 2000 Nov;10(21):2471–5. doi: 10.1016/s0960-894x(00)00498-4.; Terry N, Zayed AM, de Souza MP, Tarun AS. SELENIUM INHIGHERPLANTS. Annu. Rev. Plant. Physiol. Plant. Mol. Biol. 2000 Jun;51(1):401–32. doi: 10.1146/annurev.arplant.51.1.401.; de Souza MP, Lytle CM, Mulholland MM, Otte ML, Terry N. Selenium assimilation and volatilization from dimethylselenoniopropionate by Indian mustard. Plant Physiol. 2000 Apr;122(4):1281–8. PMID: 10759525; PMCID: PMC58964.; Pilon-Smits EAH, Hwang S, Mel Lytle C, Zhu Y, Tai JC, Bravo RC, Chen Y, Leustek T, Terry N. Overexpression of ATP Sulfurylase in Indian Mustard Leads to Increased Selenate Uptake, Reduction, and Tolerance1. 1999 Jan 01;119(1):123–32. doi: 10.1104/pp.119.1.123.; Turner RJ, Weiner JH, Taylor DE. Selenium metabolism in Escherichia coli. Biometals. 1998 Sep;11(3):223–7. doi: 10.1023/a:1009290213301. PMID: 9850565.; Burnell JN. Selenium Metabolism in Neptunia amplexicaulis. Plant Physiol. 1981 Feb 01;67(2):316–24. doi: 10.1104/pp.67.2.316.; Dilworth GL, Bandurski RS. Activation of selenate by adenosine 5'-triphosphate sulphurylase from Saccharomyces cerevisiae. Biochem J. 1977 Jun 01;163(3):521–9. PMID: 328009; PMCID: PMC1164733.; Hsieh HS, Ganther HE. Acid-volatile selenium formation catalyzed by glutathione reductase. Biochemistry. 1975 Apr 22;14(8):1632–6. doi: 10.1021/bi00679a014. PMID: 235962.; Shaw WH, Anderson JW. Purification, properties and substrate specificity of adenosine triphosphate sulphurylase from spinach leaf tissue. Biochem J. 1972 Mar;127(1):237–47. PMID: 5073745; PMCID: PMC1178578.