Pathways Knowlegdes

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Pathway DOIs Note
sulfur metabolism

Accession ID: BioCyc:MOUSE_PWY3DJ-35888		 -
sulfate reduction I (assimilatory)

Accession ID: BioCyc:SCO_SO4ASSIM-PWY		 -
sulfate activation for sulfonation

Accession ID: BioCyc:SCO_PWY-5340		 -
sulfate activation for sulfonation

Accession ID: BioCyc:FLY_PWY-5340		 -
superpathway of sulfate assimilation and cysteine biosynthesis

Accession ID: BioCyc:SYNEL_SULFATE-CYS-PWY		 -
sulfate activation for sulfonation

Accession ID: BioCyc:ECOL413997_PWY-5340		 -
sulfate reduction I (assimilatory)

Accession ID: BioCyc:ECOL413997_SO4ASSIM-PWY		 -
superpathway of sulfate assimilation and cysteine biosynthesis

Accession ID: BioCyc:MOB3B_SULFATE-CYS-PWY		 -
sulfate activation for sulfonation

Accession ID: BioCyc:MOB3B_PWY-5340		 -
sulfate reduction II (assimilatory)

Accession ID: BioCyc:THAPS_SULFMETII-PWY		 -
superpathway of methionine biosynthesis (by sulfhydrylation)

Accession ID: BioCyc:CLOSSAC_PWY-5345		 -
sulfate activation for sulfonation

Accession ID: BioCyc:BTHE_PWY-5340		 -
sulfate reduction I (assimilatory)

Accession ID: BioCyc:BTHE_SO4ASSIM-PWY		 -
superpathway of L-methionine biosynthesis (by sulfhydrylation)

Accession ID: BioCyc:CORYNE_PWY-5345		 -
sulfate reduction I (assimilatory)

Accession ID: BioCyc:CORYNE_SO4ASSIM-PWY		 -
sulfate activation for sulfonation

Accession ID: BioCyc:CORYNE_PWY-5340		 -
dissimilatory sulfate reduction I (to hydrogen sufide))

Accession ID: BioCyc:META_DISSULFRED-PWY
  • 10.1098/rstb.1982.0091
 Peck HD, LeGall J. Biochemistry of dissimilatory sulphate reduction. Philos Trans R Soc Lond B Biol Sci. 1982 Sep 13;298(1093):443–66. doi: 10.1098/rstb.1982.0091. PMID: 6127735.
photosynthetic 3-hydroxybutanoate biosynthesis (engineered)

Accession ID: BioCyc:META_PWY-7218
  • 10.1002/(sici)1097-0290(19980305)57:5<557::aid-bit8>3.0.co;2-f
  • 10.1016/0005-2728(77)90041-x
  • 10.1016/j.ymben.2013.01.001
  • 10.1038/nsmb.1559
 Wang B, Pugh S, Nielsen DR, Zhang W, Meldrum DR. Engineering cyanobacteria for photosynthetic production of 3-hydroxybutyrate directly from CO2. Metab Eng. 2013 Mar;16():68–77. doi: 10.1016/j.ymben.2013.01.001. PMID: 23333586.; Guskov A, Kern J, Gabdulkhakov A, Broser M, Zouni A, Saenger W. Cyanobacterial photosystem II at 2.9-Å resolution and the role of quinones, lipids, channels and chloride. Nature Structural & Molecular Biology. 2009 Feb 15;16(3):334–42. doi: 10.1038/nsmb.1559.; Leaf TA, Srienc F. Metabolic modeling of polyhydroxybutyrate biosynthesis. Biotechnol Bioeng. 1998 Mar 05;57(5):557–70. doi: 10.1002/(sici)1097-0290(19980305)57:5<557::aid-bit8>3.0.co;2-f. PMID: 10099235.; Knaff DB, Malkin R, Clark Myron J, Stoller M. The role of plastoquinone and ß-carotene in the primary reaction of plant Photosystem II. Biochimica et Biophysica Acta (BBA) - Bioenergetics. 1977 Mar;459(3):402–11. doi: 10.1016/0005-2728(77)90041-x.
assimilatory sulfate reduction I

Accession ID: BioCyc:META_SO4ASSIM-PWY		 -
superpathway of sulfur metabolism (Desulfocapsa sulfoexigens)

Accession ID: BioCyc:META_PWY-5308
  • 10.1023/a:1024255830925
 Frederiksen TM, Finster K. Sulfite-oxido-reductase is involved in the oxidation of sulfite in Desulfocapsa sulfoexigens during disproportionation of thiosulfate and elemental sulfur. Biodegradation. 2003 Jun;14(3):189–98. doi: 10.1023/a:1024255830925. PMID: 12889609.