Pathways Knowlegdes
Necessitatibus eius consequatur ex aliquid fuga eum quidem sint consectetur velit
| Pathway | DOIs | Note |
|---|---|---|
| pterostilbene biosynthesis Accession ID: BioCyc:META_PWY-6665 |
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Schmidlin L, Poutaraud A, Claudel P, Mestre P, Prado E, Santos-Rosa M, Wiedemann-Merdinoglu S, Karst F, Merdinoglu D, Hugueney P. A Stress-Inducible Resveratrol O-Methyltransferase Involved in the Biosynthesis of Pterostilbene in Grapevine. Plant Physiol. 2008 Sep 17;148(3):1630–9. doi: 10.1104/pp.108.126003.; Rolfs CH, Kindl H. Stilbene Synthase and Chalcone Synthase : Two Different Constitutive Enzymes in Cultured Cells of Picea excelsa. Plant Physiol. 1984 Jun;75(2):489–92. PMID: 16663649; PMCID: PMC1066935. |
| resveratrol degradation Accession ID: BioCyc:META_PWY-6667 |
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Brefort T, Scherzinger D, Limón MC, Estrada AF, Trautmann D, Mengel C, Avalos J, Al-Babili S. Cleavage of resveratrol in fungi: characterization of the enzyme Rco1 from Ustilago maydis. Fungal Genet Biol. 2011 Feb;48(2):132–43. doi: 10.1016/j.fgb.2010.10.009. PMID: 21073977. |
| ATP biosynthesis Accession ID: BioCyc:ECO_PWY-7980 |
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| ATP biosynthesis Accession ID: BioCyc:META_PWY-7980 |
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Senior AE, Nadanaciva S, Weber J. The molecular mechanism of ATP synthesis by F1F0-ATP synthase. Biochimica et Biophysica Acta (BBA) - Bioenergetics. 2002 Feb;1553(3):188–211. doi: 10.1016/s0005-2728(02)00185-8. |
| resveratrol biosynthesis Accession ID: BioCyc:META_PWY-84 |
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Ma LQ, Pang XB, Shen HY, Pu GB, Wang HH, Lei CY, Wang H, Li GF, Liu BY, Ye HC. A novel type III polyketide synthase encoded by a three-intron gene from Polygonum cuspidatum. Planta. 2009 Feb;229(3):457–69. doi: 10.1007/s00425-008-0845-7. PMID: 18998157.; Zheng D, Hrazdina G. Molecular and biochemical characterization of benzalacetone synthase and chalcone synthase genes and their proteins from raspberry (Rubus idaeus L.). Archives of Biochemistry and Biophysics. 2008 Feb;470(2):139–45. doi: 10.1016/j.abb.2007.11.013.; Hüsken A, Baumert A, Milkowski C, Becker HC, Strack D, Möllers C. Resveratrol glucoside (Piceid) synthesis in seeds of transgenic oilseed rape (Brassica napus L.). Theoretical and Applied Genetics. 2005 Sep 14;111(8):1553–62. doi: 10.1007/s00122-005-0085-1.; Aggarwal BB, Bhardwaj A, Aggarwal RS, Seeram NP, Shishodia S, Takada Y. Role of resveratrol in prevention and therapy of cancer: preclinical and clinical studies. Anticancer Res. 2004 Sep;24(5A):2783–840. PMID: 15517885.; Regev-Shoshani G, Shoseyov O, Bilkis I, Kerem Z. Glycosylation of resveratrol protects it from enzymic oxidation. Biochem J. 2003 Aug 15;374(Pt 1):157–63. PMID: 12697026; PMCID: PMC1223563.; Samappito S, Page JE, Schmidt J, De-Eknamkul W, Kutchan TM. Aromatic and pyrone polyketides synthesized by a stilbene synthase from Rheum tataricum??The nucleotide sequence reported in this paper has been submitted to the GenBank/EMBL/DDBJ with the accession number AF508150. Phytochemistry. 2003 Feb;62(3):313–23. doi: 10.1016/s0031-9422(02)00545-9.; Morita H, Noguchi H, Schröder J, Abe I. Novel polyketides synthesized with a higher plant stilbene synthase. European Journal of Biochemistry. 2001 Jul;268(13):3759–66. doi: 10.1046/j.1432-1327.2001.02289.x.; Coutos-Thévenot P, Poinssot B, Bonomelli A, Yean H, Breda C, Buffard D, Esnault R, Hain R, Boulay M. In vitro tolerance to Botrytis cinerea of grapevine 41B rootstock in transgenic plants expressing the stilbene synthase Vst1 gene under the control of a pathogen-inducible PR 10 promoter. J Exp Bot. 2001 May;52(358):901–10. doi: 10.1093/jexbot/52.358.901. PMID: 11432907.; Douillet-Breuil AC, Jeandet P, Adrian M, Bessis R. Changes in the phytoalexin content of various Vitis spp. in response to ultraviolet C elicitation. J Agric Food Chem. 1999 Oct;47(10):4456–61. doi: 10.1021/jf9900478. PMID: 10552833.; Akiyama T, Shibuya M, Liu H, Ebizuka Y. p-Coumaroyltriacetic acid synthase, a new homologue of chalcone synthase, from Hydrangea macrophylla var. thunbergii. European Journal of Biochemistry. 1999 Aug;263(3):834–9. doi: 10.1046/j.1432-1327.1999.00562.x.; Soleas GJ, Diamandis EP, Goldberg DM. Resveratrol: a molecule whose time has come? And gone? Clin Biochem. 1997 Mar;30(2):91–113. doi: 10.1016/s0009-9120(96)00155-5. PMID: 9127691.; Tropf S, Lanz T, Rensing SA, Schröder J, Schröder G. Evidence that stilbene synthases have developed from chalcone synthases several times in the course of evolution. Journal of Molecular Evolution. 1994 Jun;38(6):610–8. doi: 10.1007/bf00175881.; Hain R, Reif HJ, Krause E, Langebartels R, Kindl H, Vornam B, Wiese W, Schmelzer E, Schreier PH, Stöcker RH. Disease resistance results from foreign phytoalexin expression in a novel plant. Nature. 1993 Jan 14;361(6408):153–6. doi: 10.1038/361153a0. PMID: 8421520.; Schröder G, Schröder J. A single change of histidine to glutamine alters the substrate preference of a stilbene synthase. Journal of Biological Chemistry. 1992 Oct;267(29):20558–60. doi: 10.1016/s0021-9258(19)36721-3.; Lanz T, Tropf S, Marner FJ, Schröder J, Schröder G. The role of cysteines in polyketide synthases. Site-directed mutagenesis of resveratrol and chalcone synthases, two key enzymes in different plant-specific pathways. Journal of Biological Chemistry. 1991 May;266(15):9971–6. doi: 10.1016/s0021-9258(18)92914-5.; Hain R, Bieseler B, Kindl H, Schröder G, Stöcker R. Expression of a stilbene synthase gene in Nicotiana tabacum results in synthesis of the phytoalexin resveratrol. Plant Mol Biol. 1990 Aug;15(2):325–35. doi: 10.1007/bf00036918. PMID: 2103451.; Melchior F, Kindl H. Grapevine stilbene synthase cDNA only slightly differing from chalcone synthase cDNA is expressed in Escherichia coli into a catalytically active enzyme. FEBS Lett. 1990 Jul 30;268(1):17–20. doi: 10.1016/0014-5793(90)80961-h. PMID: 2200709.; Schröder G, Brown JW, Schröder J. Molecular analysis of resveratrol synthase. cDNA, genomic clones and relationship with chalcone synthase. Eur J Biochem. 1988 Feb 15;172(1):161–9. doi: 10.1111/j.1432-1033.1988.tb13868.x. PMID: 2450022.; Kreuzaler F, Hahlbrock K. Enzymatic synthesis of aromatic compounds in higher plants. Formation of bis-noryangonin (4-hydroxy-6[4-hydroxystyryl]2-pyrone) from p-coumaroyl-CoA and malonyl-CoA. Arch Biochem Biophys. 1975 Jul;169(1):84–90. doi: 10.1016/0003-9861(75)90319-7. PMID: 1155951. |
| resveratrol biosynthesis Accession ID: BioCyc:ARA_PWY-84 |
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| Metabolism and regulation Accession ID: Plant Reactome:R-OSA-2744345 |
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Saqib A, Scheller HV, Fredslund F, Welner DH. Molecular characteristics of plant UDP-arabinopyranose mutases. Glycobiology. 2019 Nov 20;29(12):839–46. PMID: 31679023; PMCID: PMC6861824.; Perera I, Seneweera S, Hirotsu N. Manipulating the Phytic Acid Content of Rice Grain Toward Improving Micronutrient Bioavailability. Rice (N Y). 2018 Jan 11;11(1):4. PMID: 29327163; PMCID: PMC5764899.; Rautengarten C, Birdseye D, Pattathil S, McFarlane HE, Saez-Aguayo S, Orellana A, Persson S, Hahn MG, Scheller HV, Heazlewood JL, Ebert B. The elaborate route for UDP-arabinose delivery into the Golgi of plants. Proc Natl Acad Sci U S A. 2017 Apr 18;114(16):4261–6. PMID: 28373556; PMCID: PMC5402404.; Yu L, Liu Y, Lu L, Zhang Q, Chen Y, Zhou L, Chen H, Peng C. Ascorbic acid deficiency leads to increased grain chalkiness in transgenic rice for suppressed of L-GalLDH. J Plant Physiol. 2017 Apr;211():13–26. doi: 10.1016/j.jplph.2016.11.017. PMID: 28142093.; Qin H, Deng Z, Zhang C, Wang Y, Wang J, Liu H, Zhang Z, Huang R, Zhang Z. Rice GDP-mannose pyrophosphorylase OsVTC1-1 and OsVTC1-3 play different roles in ascorbic acid synthesis. Plant Mol Biol. 2016 Feb;90(3):317–27. doi: 10.1007/s11103-015-0420-0. PMID: 26715595.; Nozoye T, Nagasaka S, Kobayashi T, Sato Y, Uozumi N, Nakanishi H, Nishizawa NK. The Phytosiderophore Efflux Transporter TOM2 Is Involved in Metal Transport in Rice. Journal of Biological Chemistry. 2015 Nov;290(46):27688–99. doi: 10.1074/jbc.m114.635193.; Bennett T. PIN proteins and the evolution of plant development. Trends Plant Sci. 2015 Aug;20(8):498–507. doi: 10.1016/j.tplants.2015.05.005. PMID: 26051227.; Mohanta TK, Mohanta N, Bae H. Identification and Expression Analysis of PIN-Like (PILS) Gene Family of Rice Treated with Auxin and Cytokinin. Genes (Basel). 2015 Jul 16;6(3):622–40. PMID: 26193322; PMCID: PMC4584321.; Lam PY, Liu H, Lo C. Completion of Tricin Biosynthesis Pathway in Rice: Cytochrome P450 75B4 Is a Unique Chrysoeriol 5'-Hydroxylase. Plant Physiol. 2015 Aug;168(4):1527–36. PMID: 26082402; PMCID: PMC4528758.; Zhang G, Liu R, Zhang C, Tang K, Sun M, Yan G, Liu Q. Manipulation of the Rice L-Galactose Pathway: Evaluation of the Effects of Transgene Overexpression on Ascorbate Accumulation and Abiotic Stress Tolerance. PLoS ONE. 2015 May 04;10(5):e0125870. doi: 10.1371/journal.pone.0125870.; Seyfferth C, Tsuda K. Salicylic acid signal transduction: the initiation of biosynthesis, perception and transcriptional reprogramming. Front Plant Sci. 2014;5():697. PMID: 25538725; PMCID: PMC4260477.; Wang W, Bai M, Wang Z. The brassinosteroid signaling network — a paradigm of signal integration. Current Opinion in Plant Biology. 2014 Oct;21():147–53. doi: 10.1016/j.pbi.2014.07.012.; Balzan S, Johal GS, Carraro N. The role of auxin transporters in monocots development. Front Plant Sci. 2014;5():393. PMID: 25177324; PMCID: PMC4133927.; Bernardo-García S, de Lucas M, Martínez C, Espinosa-Ruiz A, Davière JM, Prat S. BR-dependent phosphorylation modulates PIF4 transcriptional activity and shapes diurnal hypocotyl growth. Genes Dev. 2014 Aug 01;28(15):1681–94. PMID: 25085420; PMCID: PMC4117943.; Oh E, Zhu J, Ryu H, Hwang I, Wang Z. TOPLESS mediates brassinosteroid-induced transcriptional repression through interaction with BZR1. Nature Communications. 2014 Jun 18;5(1):4140. doi: 10.1038/ncomms5140.; Lunn JE, Delorge I, Figueroa CM, Van Dijck P, Stitt M. Trehalose metabolism in plants. Plant J. 2014 Aug;79(4):544–67. doi: 10.1111/tpj.12509. PMID: 24645920.; Lam PY, Zhu FY, Chan WL, Liu H, Lo C. Cytochrome P450 93G1 Is a Flavone Synthase II That Channels Flavanones to the Biosynthesis of Tricin O-Linked Conjugates in Rice. Plant Physiol. 2014 Jul;165(3):1315–27. PMID: 24843076; PMCID: PMC4081339.; Barberon M, Dubeaux G, Kolb C, Isono E, Zelazny E, Vert G. Polarization of IRON-REGULATED TRANSPORTER 1 (IRT1) to the plant-soil interface plays crucial role in metal homeostasis. Proc Natl Acad Sci U S A. 2014 Jun 03;111(22):8293–8. PMID: 24843126; PMCID: PMC4050562.; Lee C, Teng Q, Zhong R, Yuan Y, Ye Z. Functional roles of rice glycosyltransferase family GT43 in xylan biosynthesis. Plant Signaling & Behavior. 2014 Feb 13;9(3):e27809. doi: 10.4161/psb.27809.; Ma B, He SJ, Duan KX, Yin CC, Chen H, Yang C, Xiong Q, Song QX, Lu X, Chen HW, Zhang WK, Lu TG, Chen SY, Zhang JS. Identification of rice ethylene-response mutants and characterization of MHZ7/OsEIN2 in distinct ethylene response and yield trait regulation. Mol Plant. 2013 Nov;6(6):1830–48. doi: 10.1093/mp/sst087. PMID: 23718947.; Wang Q, Zhang W, Yin Z, Wen CK. Rice CONSTITUTIVE TRIPLE-RESPONSE2 is involved in the ethylene-receptor signalling and regulation of various aspects of rice growth and development. J Exp Bot. 2013 Nov;64(16):4863–75. PMID: 24006427; PMCID: PMC3830475.; Werner AK, Medina-Escobar N, Zulawski M, Sparkes IA, Cao FQ, Witte CP. The ureide-degrading reactions of purine ring catabolism employ three amidohydrolases and one aminohydrolase in Arabidopsis, soybean, and rice. Plant Physiol. 2013 Oct;163(2):672–81. PMID: 23940254; PMCID: PMC3793049.; Itai RN, Ogo Y, Kobayashi T, Nakanishi H, Nishizawa NK. Rice genes involved in phytosiderophore biosynthesis are synchronously regulated during the early stages of iron deficiency in roots. Rice (N Y). 2013 Jun 25;6(1):16. PMID: 24280375; PMCID: PMC4883707.; Flis VV, Daum G. Lipid Transport between the Endoplasmic Reticulum and Mitochondria. Cold Spring Harbor Perspectives in Biology. 2013 Jun 01;5(6):a013235. doi: 10.1101/cshperspect.a013235.; Bender RL, Fekete ML, Klinkenberg PM, Hampton M, Bauer B, Malecha M, Lindgren K, A. Maki J, Perera MADN, Nikolau BJ, Carter CJ. PIN6 is required for nectary auxin response and short stamen development. The Plant Journal. 2013 May 02;74(6):893–904. doi: 10.1111/tpj.12184.; Sawchuk MG, Edgar A, Scarpella E. Patterning of Leaf Vein Networks by Convergent Auxin Transport Pathways. PLoS Genet. 2013 Feb 21;9(2):e1003294. doi: 10.1371/journal.pgen.1003294.; Chiniquy D, Sharma V, Schultink A, Baidoo EE, Rautengarten C, Cheng K, Carroll A, Ulvskov P, Harholt J, Keasling JD, Pauly M, Scheller HV, Ronald PC. XAX1 from glycosyltransferase family 61 mediates xylosyltransfer to rice xylan. Proc Natl Acad Sci U S A. 2012 Oct 16;109(42):17117–22. PMID: 23027943; PMCID: PMC3479505.; Zhao B, Li J. Regulation of brassinosteroid biosynthesis and inactivation. J Integr Plant Biol. 2012 Oct;54(10):746–59. doi: 10.1111/j.1744-7909.2012.01168.x. PMID: 22963251.; Oh E, Zhu JY, Wang ZY. Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses. Nat Cell Biol. 2012 Aug;14(8):802–9. PMID: 22820378; PMCID: PMC3703456.; Ding Z, Wang B, Moreno I, Dupláková N, Simon S, Carraro N, Reemmer J, Pencík A, Chen X, Tejos R, Skupa P, Pollmann S, Mravec J, Petrášek J, Zažímalová E, Honys D, Rolcík J, Murphy A, Orellana A, Geisler M, Friml J. ER-localized auxin transporter PIN8 regulates auxin homeostasis and male gametophyte development in Arabidopsis. Nat Commun. 2012 Jul 03;3():941. doi: 10.1038/ncomms1941. PMID: 22760640.; Kakei Y, Ishimaru Y, Kobayashi T, Yamakawa T, Nakanishi H, Nishizawa NK. OsYSL16 plays a role in the allocation of iron. Plant Molecular Biology. 2012 May 29;79(6):583–94. doi: 10.1007/s11103-012-9930-1.; Barbez E, Kubeš M, Rolcík J, Béziat C, Pencík A, Wang B, Rosquete MR, Zhu J, Dobrev PI, Lee Y, Zažímalovà E, Petrášek J, Geisler M, Friml J, Kleine-Vehn J. A novel putative auxin carrier family regulates intracellular auxin homeostasis in plants. Nature. 2012 Apr 15;485(7396):119–22. doi: 10.1038/nature11001. PMID: 22504182.; Mano Y, Nemoto K. The pathway of auxin biosynthesis in plants. Journal of Experimental Botany. 2012 Mar 23;63(8):2853–72. doi: 10.1093/jxb/ers091.; Wang P, Kong CH, Sun B, Xu XH. Distribution and function of allantoin (5-ureidohydantoin) in rice grains. J Agric Food Chem. 2012 Mar 21;60(11):2793–8. doi: 10.1021/jf2051043. PMID: 22369364.; Zhao Y. Auxin biosynthesis: a simple two-step pathway converts tryptophan to indole-3-acetic acid in plants. Mol Plant. 2012 Mar;5(2):334–8. PMID: 22155950; PMCID: PMC3309920.; Anders N, Wilkinson MD, Lovegrove A, Freeman J, Tryfona T, Pellny TK, Weimar T, Mortimer JC, Stott K, Baker JM, Defoin-Platel M, Shewry PR, Dupree P, Mitchell RAC. Glycosyl transferases in family 61 mediate arabinofuranosyl transfer onto xylan in grasses. Proc. Natl. Acad. Sci. U.S.A. 2012 Jan 03;109(3):989–93. doi: 10.1073/pnas.1115858109.; Lee S, Ryoo N, Jeon J, Guerinot ML, An G. Activation of rice Yellow Stripe1-Like 16 (OsYSL16) enhances iron efficiency. Molecules and Cells. 2012 Jan 03;33(2):117–26. doi: 10.1007/s10059-012-2165-9.; Saito M, Yoshida M. Expression analysis of the gene family associated with raffinose accumulation in rice seedlings under cold stress. J Plant Physiol. 2011 Dec 15;168(18):2268–71. doi: 10.1016/j.jplph.2011.07.002. PMID: 21824678.; Takahashi R, Ishimaru Y, Nakanishi H, Nishizawa NK. Role of the iron transporter OsNRAMP1 in cadmium uptake and accumulation in rice. Plant Signaling & Behavior. 2011 Nov;6(11):1813–6. doi: 10.4161/psb.6.11.17587.; Won C, Shen X, Mashiguchi K, Zheng Z, Dai X, Cheng Y, Kasahara H, Kamiya Y, Chory J, Zhao Y. Conversion of tryptophan to indole-3-acetic acid by TRYPTOPHAN AMINOTRANSFERASES OF ARABIDOPSIS and YUCCAs in Arabidopsis. Proc. Natl. Acad. Sci. U.S.A. 2011 Oct 24;108(45):18518–23. doi: 10.1073/pnas.1108436108.; Mashiguchi K, Tanaka K, Sakai T, Sugawara S, Kawaide H, Natsume M, Hanada A, Yaeno T, Shirasu K, Yao H, McSteen P, Zhao Y, Hayashi K, Kamiya Y, Kasahara H. The main auxin biosynthesis pathway in Arabidopsis. Proc. Natl. Acad. Sci. U.S.A. 2011 Oct 24;108(45):18512–7. doi: 10.1073/pnas.1108434108.; Nozoye T, Nagasaka S, Kobayashi T, Takahashi M, Sato Y, Sato Y, Uozumi N, Nakanishi H, Nishizawa NK. Phytosiderophore Efflux Transporters Are Crucial for Iron Acquisition in Graminaceous Plants. Journal of Biological Chemistry. 2011 Feb;286(7):5446–54. doi: 10.1074/jbc.m110.180026.; Ludwig-Müller J. Auxin conjugates: their role for plant development and in the evolution of land plants. J Exp Bot. 2011 Mar;62(6):1757–73. doi: 10.1093/jxb/erq412. PMID: 21307383.; Carroll A, Specht CD. Understanding Plant Cellulose Synthases through a Comprehensive Investigation of the Cellulose Synthase Family Sequences. Front Plant Sci. 2011;2():5. PMID: 22629257; PMCID: PMC3355508.; Lehmann T, Hoffmann M, Hentrich M, Pollmann S. Indole-3-acetamide-dependent auxin biosynthesis: A widely distributed way of indole-3-acetic acid production? 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PMID: 19737364.; Mravec J, Skupa P, Bailly A, Hoyerová K, Krecek P, Bielach A, Petrásek J, Zhang J, Gaykova V, Stierhof YD, Dobrev PI, Schwarzerová K, Rolcík J, Seifertová D, Luschnig C, Benková E, Zazímalová E, Geisler M, Friml J. Subcellular homeostasis of phytohormone auxin is mediated by the ER-localized PIN5 transporter. Nature. 2009 Jun 25;459(7250):1136–40. doi: 10.1038/nature08066. PMID: 19506555.; Wuriyanghan H, Zhang B, Cao WH, Ma B, Lei G, Liu YF, Wei W, Wu HJ, Chen LJ, Chen HW, Cao YR, He SJ, Zhang WK, Wang XJ, Chen SY, Zhang JS. The ethylene receptor ETR2 delays floral transition and affects starch accumulation in rice. Plant Cell. 2009 May;21(5):1473–94. PMID: 19417056; PMCID: PMC2700534.; Inoue H, Kobayashi T, Nozoye T, Takahashi M, Kakei Y, Suzuki K, Nakazono M, Nakanishi H, Mori S, Nishizawa NK. Rice OsYSL15 Is an Iron-regulated Iron(III)-Deoxymugineic Acid Transporter Expressed in the Roots and Is Essential for Iron Uptake in Early Growth of the Seedlings. Journal of Biological Chemistry. 2009 Feb;284(6):3470–9. doi: 10.1074/jbc.m806042200.; Linster CL, Adler LN, Webb K, Christensen KC, Brenner C, Clarke SG. A second GDP-L-galactose phosphorylase in arabidopsis en route to vitamin C. Covalent intermediate and substrate requirements for the conserved reaction. J Biol Chem. 2008 Jul 04;283(27):18483–92. PMID: 18463094; PMCID: PMC2441562.; Vogel J. Unique aspects of the grass cell wall. Curr Opin Plant Biol. 2008 Jun;11(3):301–7. doi: 10.1016/j.pbi.2008.03.002. PMID: 18434239.; Suzuki M, Tanaka K, Kuwano M, Yoshida KT. Expression pattern of inositol phosphate-related enzymes in rice (Oryza sativa L.): implications for the phytic acid biosynthetic pathway. Gene. 2007 Dec 15;405(1-2):55–64. doi: 10.1016/j.gene.2007.09.006. PMID: 17961936.; Kobayashi T, Ogo Y, Itai RN, Nakanishi H, Takahashi M, Mori S, Nishizawa NK. The transcription factor IDEF1 regulates the response to and tolerance of iron deficiency in plants. Proc Natl Acad Sci U S A. 2007 Nov 27;104(48):19150–5. PMID: 18025467; PMCID: PMC2141923.; Shimura K, Okada A, Okada K, Jikumaru Y, Ko K, Toyomasu T, Sassa T, Hasegawa M, Kodama O, Shibuya N, Koga J, Nojiri H, Yamane H. Identification of a Biosynthetic Gene Cluster in Rice for Momilactones. Journal of Biological Chemistry. 2007 Nov;282(47):34013–8. doi: 10.1074/jbc.m703344200.; Inoue H, Takahashi M, Kobayashi T, Suzuki M, Nakanishi H, Mori S, Nishizawa NK. Identification and localisation of the rice nicotianamine aminotransferase gene OsNAAT1 expression suggests the site of phytosiderophore synthesis in rice. Plant Mol Biol. 2008 Jan;66(1-2):193–203. doi: 10.1007/s11103-007-9262-8. PMID: 18034312.; Baud S, Wuillème S, Dubreucq B, De Almeida A, Vuagnat C, Lepiniec L, Miquel M, Rochat C. Function of plastidial pyruvate kinases in seeds of Arabidopsis thaliana†. 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Direct control of shoot meristem activity by a cytokinin-activating enzyme. Nature. 2007 Feb 08;445(7128):652–5. doi: 10.1038/nature05504. PMID: 17287810.; Hofmann E, Zerbe P, Schaller F. The crystal structure of Arabidopsis thaliana allene oxide cyclase: insights into the oxylipin cyclization reaction. Plant Cell. 2006 Nov;18(11):3201–17. PMID: 17085685; PMCID: PMC1693953.; Bashir K, Inoue H, Nagasaka S, Takahashi M, Nakanishi H, Mori S, Nishizawa NK. Cloning and Characterization of Deoxymugineic Acid Synthase Genes from Graminaceous Plants. Journal of Biological Chemistry. 2006 Oct;281(43):32395–402. doi: 10.1074/jbc.m604133200.; KANNO Y, OTOMO K, KENMOKU H, MITSUHASHI W, YAMANE H, OIKAWA H, TOSHIMA H, MATSUOKA M, SASSA T, TOYOMASU T. Characterization of a Rice Gene Family Encoding Type-A Diterpene Cyclases. Bioscience, Biotechnology, and Biochemistry. 2006 Jul 23;70(7):1702–10. doi: 10.1271/bbb.60044.; Nozu Y, Tsugita A, Kamijo K. 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| Secondary metabolism Accession ID: Plant Reactome:R-OSA-2744344 |
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Perera I, Seneweera S, Hirotsu N. Manipulating the Phytic Acid Content of Rice Grain Toward Improving Micronutrient Bioavailability. Rice (N Y). 2018 Jan 11;11(1):4. PMID: 29327163; PMCID: PMC5764899.; Lam PY, Liu H, Lo C. Completion of Tricin Biosynthesis Pathway in Rice: Cytochrome P450 75B4 Is a Unique Chrysoeriol 5'-Hydroxylase. Plant Physiol. 2015 Aug;168(4):1527–36. PMID: 26082402; PMCID: PMC4528758.; Lam PY, Zhu FY, Chan WL, Liu H, Lo C. Cytochrome P450 93G1 Is a Flavone Synthase II That Channels Flavanones to the Biosynthesis of Tricin O-Linked Conjugates in Rice. Plant Physiol. 2014 Jul;165(3):1315–27. PMID: 24843076; PMCID: PMC4081339.; Suzuki M, Tanaka K, Kuwano M, Yoshida KT. Expression pattern of inositol phosphate-related enzymes in rice (Oryza sativa L.): implications for the phytic acid biosynthetic pathway. Gene. 2007 Dec 15;405(1-2):55–64. doi: 10.1016/j.gene.2007.09.006. PMID: 17961936.; Shimura K, Okada A, Okada K, Jikumaru Y, Ko K, Toyomasu T, Sassa T, Hasegawa M, Kodama O, Shibuya N, Koga J, Nojiri H, Yamane H. Identification of a Biosynthetic Gene Cluster in Rice for Momilactones. Journal of Biological Chemistry. 2007 Nov;282(47):34013–8. doi: 10.1074/jbc.m703344200. |
| Resveratrol biosynthesis Accession ID: Plant Reactome:R-OSA-1119630 |
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| resveratrol biosynthesis Accession ID: PlantCyc:SOY_PWY-84 |
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| resveratrol biosynthesis Accession ID: PlantCyc:SUNFLOWER_PWY-84 |
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| pterostilbene biosynthesis Accession ID: PlantCyc:SVIRIDIS_PWY-6665 |
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| resveratrol biosynthesis Accession ID: PlantCyc:AHALLERI_PWY-84 |
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| pterostilbene biosynthesis Accession ID: PlantCyc:WHEATA_PWY-6665 |
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| resveratrol biosynthesis Accession ID: PlantCyc:WHEATA_PWY-84 |
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| pterostilbene biosynthesis Accession ID: PlantCyc:WHEATD_PWY-6665 |
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| resveratrol biosynthesis Accession ID: PlantCyc:BRACHYPODIUM_PWY-84 |
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| resveratrol biosynthesis Accession ID: PlantCyc:BREADWHEAT_PWY-84 |
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| pterostilbene biosynthesis Accession ID: PlantCyc:CARNATION_PWY-6665 |
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| pterostilbene biosynthesis Accession ID: PlantCyc:CASSAVA_PWY-6665 |
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