Pathways Knowlegdes

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Pathway DOIs Note
Secondary metabolism

Accession ID: Plant Reactome:R-TAE-2744344		 -
Metabolism and regulation

Accession ID: Plant Reactome:R-TDI-2744345		 -
Metabolism and regulation

Accession ID: Plant Reactome:R-DRO-2744345		 -
Lipid-independent phytate biosynthesis

Accession ID: Plant Reactome:R-OMI-1119434
  • 10.1007/s00122-008-0818-z
  • 10.1007/s00122-008-0863-7
  • 10.1007/s10529-008-9730-5
  • 10.1007/s11103-011-9830-9
  • 10.1016/j.gene.2007.09.006
  • 10.1111/j.1467-7652.2008.00375.x
  • 10.1186/s12284-018-0200-y
 Perera I, Seneweera S, Hirotsu N. Manipulating the Phytic Acid Content of Rice Grain Toward Improving Micronutrient Bioavailability. Rice (N Y). 2018 Jan 11;11(1):4. PMID: 29327163; PMCID: PMC5764899.; Du H, Liu L, You L, Yang M, He Y, Li X, Xiong L. Characterization of an inositol 1,3,4-trisphosphate 5/6-kinase gene that is essential for drought and salt stress responses in rice. Plant Mol Biol. 2011 Dec;77(6):547–63. doi: 10.1007/s11103-011-9830-9. PMID: 22038091.; Kuwano M, Mimura T, Takaiwa F, Yoshida KT. Generation of stable ‘low phytic acid’ transgenic rice through antisense repression of the 1d-myo-inositol 3-phosphate synthase gene (RINO1) using the 18-kDa oleosin promoter. Plant Biotechnology Journal. 2008 Dec 12;7(1):96–105. doi: 10.1111/j.1467-7652.2008.00375.x.; Kim SI, Andaya CB, Newman JW, Goyal SS, Tai TH. Isolation and characterization of a low phytic acid rice mutant reveals a mutation in the rice orthologue of maize MIK. Theor Appl Genet. 2008 Nov;117(8):1291–301. doi: 10.1007/s00122-008-0863-7. PMID: 18726583.; Kim SI, Andaya CB, Goyal SS, Tai TH. The rice OsLpa1 gene encodes a novel protein involved in phytic acid metabolism. Theoretical and Applied Genetics. 2008 Jun 20;117(5):769–79. doi: 10.1007/s00122-008-0818-z.; Niu X, Chen Q, Wang X. OsITL1 gene encoding an inositol 1,3,4-trisphosphate 5/6-kinase is a negative regulator of osmotic stress signaling. Biotechnol Lett. 2008 Sep;30(9):1687–92. doi: 10.1007/s10529-008-9730-5. PMID: 18421420.; Suzuki M, Tanaka K, Kuwano M, Yoshida KT. Expression pattern of inositol phosphate-related enzymes in rice (Oryza sativa L.): implications for the phytic acid biosynthetic pathway. Gene. 2007 Dec 15;405(1-2):55–64. doi: 10.1016/j.gene.2007.09.006. PMID: 17961936.
Metabolism and regulation

Accession ID: Plant Reactome:R-PDA-2744345		 -
Lipid-independent phytate biosynthesis

Accession ID: Plant Reactome:R-CCA-1119434
  • 10.1007/s00122-008-0818-z
  • 10.1007/s00122-008-0863-7
  • 10.1007/s10529-008-9730-5
  • 10.1007/s11103-011-9830-9
  • 10.1016/j.gene.2007.09.006
  • 10.1111/j.1467-7652.2008.00375.x
  • 10.1186/s12284-018-0200-y
 Perera I, Seneweera S, Hirotsu N. Manipulating the Phytic Acid Content of Rice Grain Toward Improving Micronutrient Bioavailability. Rice (N Y). 2018 Jan 11;11(1):4. PMID: 29327163; PMCID: PMC5764899.; Du H, Liu L, You L, Yang M, He Y, Li X, Xiong L. Characterization of an inositol 1,3,4-trisphosphate 5/6-kinase gene that is essential for drought and salt stress responses in rice. Plant Mol Biol. 2011 Dec;77(6):547–63. doi: 10.1007/s11103-011-9830-9. PMID: 22038091.; Kuwano M, Mimura T, Takaiwa F, Yoshida KT. Generation of stable ‘low phytic acid’ transgenic rice through antisense repression of the 1d-myo-inositol 3-phosphate synthase gene (RINO1) using the 18-kDa oleosin promoter. Plant Biotechnology Journal. 2008 Dec 12;7(1):96–105. doi: 10.1111/j.1467-7652.2008.00375.x.; Kim SI, Andaya CB, Newman JW, Goyal SS, Tai TH. Isolation and characterization of a low phytic acid rice mutant reveals a mutation in the rice orthologue of maize MIK. Theor Appl Genet. 2008 Nov;117(8):1291–301. doi: 10.1007/s00122-008-0863-7. PMID: 18726583.; Kim SI, Andaya CB, Goyal SS, Tai TH. The rice OsLpa1 gene encodes a novel protein involved in phytic acid metabolism. Theoretical and Applied Genetics. 2008 Jun 20;117(5):769–79. doi: 10.1007/s00122-008-0818-z.; Niu X, Chen Q, Wang X. OsITL1 gene encoding an inositol 1,3,4-trisphosphate 5/6-kinase is a negative regulator of osmotic stress signaling. Biotechnol Lett. 2008 Sep;30(9):1687–92. doi: 10.1007/s10529-008-9730-5. PMID: 18421420.; Suzuki M, Tanaka K, Kuwano M, Yoshida KT. Expression pattern of inositol phosphate-related enzymes in rice (Oryza sativa L.): implications for the phytic acid biosynthetic pathway. Gene. 2007 Dec 15;405(1-2):55–64. doi: 10.1016/j.gene.2007.09.006. PMID: 17961936.
Metabolism and regulation

Accession ID: Plant Reactome:R-CSI-2744345		 -
Metabolism and regulation

Accession ID: Plant Reactome:R-MDO-2744345		 -
Metabolism and regulation

Accession ID: Plant Reactome:R-ZMA-2744345		 -
Secondary metabolism

Accession ID: Plant Reactome:R-ZMA-2744344		 -
Lipid-independent phytate biosynthesis

Accession ID: Plant Reactome:R-ZMA-1119434
  • 10.1007/s00122-008-0818-z
  • 10.1007/s00122-008-0863-7
  • 10.1007/s10529-008-9730-5
  • 10.1007/s11103-011-9830-9
  • 10.1016/j.gene.2007.09.006
  • 10.1111/j.1467-7652.2008.00375.x
  • 10.1186/s12284-018-0200-y
 Perera I, Seneweera S, Hirotsu N. Manipulating the Phytic Acid Content of Rice Grain Toward Improving Micronutrient Bioavailability. Rice (N Y). 2018 Jan 11;11(1):4. PMID: 29327163; PMCID: PMC5764899.; Du H, Liu L, You L, Yang M, He Y, Li X, Xiong L. Characterization of an inositol 1,3,4-trisphosphate 5/6-kinase gene that is essential for drought and salt stress responses in rice. Plant Mol Biol. 2011 Dec;77(6):547–63. doi: 10.1007/s11103-011-9830-9. PMID: 22038091.; Kuwano M, Mimura T, Takaiwa F, Yoshida KT. Generation of stable ‘low phytic acid’ transgenic rice through antisense repression of the 1d-myo-inositol 3-phosphate synthase gene (RINO1) using the 18-kDa oleosin promoter. Plant Biotechnology Journal. 2008 Dec 12;7(1):96–105. doi: 10.1111/j.1467-7652.2008.00375.x.; Kim SI, Andaya CB, Newman JW, Goyal SS, Tai TH. Isolation and characterization of a low phytic acid rice mutant reveals a mutation in the rice orthologue of maize MIK. Theor Appl Genet. 2008 Nov;117(8):1291–301. doi: 10.1007/s00122-008-0863-7. PMID: 18726583.; Kim SI, Andaya CB, Goyal SS, Tai TH. The rice OsLpa1 gene encodes a novel protein involved in phytic acid metabolism. Theoretical and Applied Genetics. 2008 Jun 20;117(5):769–79. doi: 10.1007/s00122-008-0818-z.; Niu X, Chen Q, Wang X. OsITL1 gene encoding an inositol 1,3,4-trisphosphate 5/6-kinase is a negative regulator of osmotic stress signaling. Biotechnol Lett. 2008 Sep;30(9):1687–92. doi: 10.1007/s10529-008-9730-5. PMID: 18421420.; Suzuki M, Tanaka K, Kuwano M, Yoshida KT. Expression pattern of inositol phosphate-related enzymes in rice (Oryza sativa L.): implications for the phytic acid biosynthetic pathway. Gene. 2007 Dec 15;405(1-2):55–64. doi: 10.1016/j.gene.2007.09.006. PMID: 17961936.
Secondary metabolism

Accession ID: Plant Reactome:R-OGL-2744344		 -
Secondary metabolism

Accession ID: Plant Reactome:R-OME-2744344		 -
Metabolism and regulation

Accession ID: Plant Reactome:R-BDI-2744345		 -
Secondary metabolism

Accession ID: Plant Reactome:R-CCN-2744344		 -
Metabolism and regulation

Accession ID: Plant Reactome:R-SBI-2744345		 -
Phytic acid biosynthesis

Accession ID: Plant Reactome:R-ATA-9640027		 -
Phytic acid biosynthesis

Accession ID: Plant Reactome:R-ORU-9640027		 -
Phytic acid biosynthesis

Accession ID: Plant Reactome:R-TAE-9640027		 -
Phytic acid biosynthesis

Accession ID: Plant Reactome:R-OMI-9640027		 -