Pathways Knowlegdes
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| Pathway | DOIs | Note |
|---|---|---|
| gallate degradation III (anaerobic) Accession ID: BioCyc:CLOSTSYMB_P3-PWY |
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| gallate degradation III (anaerobic) Accession ID: BioCyc:ANTHRA_P3-PWY |
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| gallate degradation III (anaerobic) Accession ID: BioCyc:CLOSSAC_P3-PWY |
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| 1,3,5-trimethoxybenzene biosynthesis Accession ID: BioCyc:META_PWY-5765 |
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Wu S, Watanabe N, Mita S, Dohra H, Ueda Y, Shibuya M, Ebizuka Y. The key role of phloroglucinol O-methyltransferase in the biosynthesis of Rosa chinensis volatile 1,3,5-trimethoxybenzene. Plant Physiol. 2004 May;135(1):95–102. PMID: 15122041; PMCID: PMC429336.; Wu S, Watanabe N, Mita S, Ueda Y, Shibuya M, Ebizuka Y. Two O-Methyltransferases isolated from flower petals of Rosa chinensis var. spontanea involved in scent biosynthesis. Journal of Bioscience and Bioengineering. 2003 Jan;96(2):119–28. doi: 10.1016/s1389-1723(03)90113-7. |
| thyroid hormone biosynthesis Accession ID: BioCyc:META_PWY-6241 |
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Bizhanova A, Kopp P: Minireview: The sodium-iodide symporter NIS and pendrin in iodide homeostasis of the thyroid. Endocrinology. 2009 Mar;150(3):1084-90. doi: 10.1210/en.2008-1437. Epub 2009 Feb 5.; Ruf J, Carayon P. Structural and functional aspects of thyroid peroxidase. Archives of Biochemistry and Biophysics. 2006 Jan;445(2):269–77. doi: 10.1016/j.abb.2005.06.023.; Friedrichs B, Tepel C, Reinheckel T, Deussing J, von Figura K, Herzog V, Peters C, Saftig P, Brix K. Thyroid functions of mouse cathepsins B, K, and L. J Clin Invest. 2003 Jun;111(11):1733–45. PMID: 12782676; PMCID: PMC156100.; Dunn JT, Dunn AD. Update on intrathyroidal iodine metabolism. Thyroid. 2001 May;11(5):407–14. doi: 10.1089/105072501300176363. PMID: 11396699.; Dunn JT, Dunn AD. The importance of thyroglobulin structure for thyroid hormone biosynthesis**We shared with our friend and colleague, the late Gaetano Salvatore, a long–standing interest in thyroglobulin structure, as well as a broader interest in the optimal production of thyroid hormone and its dependence on adequate iodine supply. Over the years, we frequently discussed progress in this field with him and his many co–workers. We now welcome the opportunity to review some of our investigative work in one of his favorite fields, in his honor. Biochimie. 1999 May;81(5):505–9. doi: 10.1016/s0300-9084(99)80102-3. |
| alkylnitronates degradation Accession ID: BioCyc:META_PWY-723 |
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Gorlatova N, Tchorzewski M, Kurihara T, Soda K, Esaki N. Purification, Characterization, and Mechanism of a Flavin Mononucleotide-Dependent 2-Nitropropane Dioxygenase from Neurospora crassa. Appl Environ Microbiol. 1998 Mar;64(3):1029–33. doi: 10.1128/aem.64.3.1029-1033.1998.; Colandene JD, Garrett RH. Functional Dissection and Site-directed Mutagenesis of the Structural Gene for NAD(P)H-Nitrite Reductase in Neurospora crassa. Journal of Biological Chemistry. 1996 Sep;271(39):24096–104. doi: 10.1074/jbc.271.39.24096.; Exley GE, Colandene JD, Garrett RH. Molecular cloning, characterization, and nucleotide sequence of nit-6, the structural gene for nitrite reductase in Neurospora crassa. J Bacteriol. 1993 Apr;175(8):2379–92. doi: 10.1128/jb.175.8.2379-2392.1993.; Prodouz KN, Garrett RH. Neurospora crassa NAD(P)H-nitrite reductase. Studies on its composition and structure. Journal of Biological Chemistry. 1981 Sep;256(18):9711–7. doi: 10.1016/s0021-9258(19)68821-6.; Greenbaum P, Prodouz KN, Garrett RH. Preparation and some properties of homogeneous Neurospora crassa assimilatory NADPH-nitrite reductase. Biochimica et Biophysica Acta (BBA) - Enzymology. 1978 Sep;526(1):52–64. doi: 10.1016/0005-2744(78)90289-9.; Kido T, Soda K, Suzuki T, Asada K. A new oxygenase, 2-nitropropane dioxygenase of Hansenula mrakii. Enzymologic and spectrophotometric properties. Journal of Biological Chemistry. 1976 Nov;251(22):6994–7000. doi: 10.1016/s0021-9258(17)32932-0.; Kido T, Yamamoto T, Soda K. Microbial assimilation of alkyl nitro compounds and formation of nitrite. Arch Microbiol. 1975 Dec 31;106(3):165–9. doi: 10.1007/bf00446519. PMID: 1217935.; Vega J, Garrett R. Siroheme: a prosthetic group of the Neurospora crassa assimilatory nitrite reductase. Journal of Biological Chemistry. 1975 Oct;250(20):7980–9. doi: 10.1016/s0021-9258(19)40804-1.; Lafferty MA, Garrett RH. Purification and Properties of the Neurospora crassa Assimilatory Nitrite Reductase. Journal of Biological Chemistry. 1974 Dec;249(23):7555–67. doi: 10.1016/s0021-9258(19)81274-7.; Prakash O, Sadana JC. Purification, characterization and properties of nitrite reductase of Achromobacter fischeri. Archives of Biochemistry and Biophysics. 1972 Feb;148(2):614–32. doi: 10.1016/0003-9861(72)90181-6.; Pateman JA, Rever BM, Cove DJ. Genetic and biochemical studies of nitrate reduction in Aspergillus nidulans. Biochem J. 1967 Jul;104(1):103–11. PMID: 4382427; PMCID: PMC1270550. |
| 1,3,5-trimethoxybenzene biosynthesis Accession ID: BioCyc:ARA_PWY-5765 |
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| gallate degradation III (anaerobic) Accession ID: BioCyc:META_P3-PWY |
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Thorpe C, Kim JP. Structure and mechanism of action of the Acyl-CoA dehydrogenases 1. The FASEB Journal. 1995 Jun;9(9):718–25. doi: 10.1096/fasebj.9.9.7601336.; Haddock JD, Ferry JG. Initial steps in the anaerobic degradation of 3,4,5-trihydroxybenzoate by Eubacterium oxidoreducens: characterization of mutants and role of 1,2,3,5-tetrahydroxybenzene. J Bacteriol. 1993 Feb;175(3):669–73. doi: 10.1128/jb.175.3.669-673.1993.; Krumholz LR, Crawford RL, Hemling ME, Bryant MP. Metabolism of gallate and phloroglucinol in Eubacterium oxidoreducens via 3-hydroxy-5-oxohexanoate. J Bacteriol. 1987 May;169(5):1886–90. doi: 10.1128/jb.169.5.1886-1890.1987.; Hauge JG, Crane FL, Beinert H. ON THE MECHANISM OF DEHYDROGENATION OF FATTY ACYL DERIVATIVES OF COENZYME A. Journal of Biological Chemistry. 1956 Apr;219(2):727–33. doi: 10.1016/s0021-9258(18)65732-1.; Green DE, Mii S, Mahler HR, Bock RM. STUDIES ON THE FATTY ACID OXIDIZING SYSTEM OF ANIMAL TISSUES. Journal of Biological Chemistry. 1954 Jan;206(1):1–12. doi: 10.1016/s0021-9258(18)71290-8.; MAHLER HR. Studies on the fatty acid oxidizing system of animal tissues. IV. The prosthetic group of butyryl coenzyme A dehydrogenase. J Biol Chem. 1954 Jan;206(1):13–26. PMID: 13130522. |
| gallate degradation III (anaerobic) Accession ID: BioCyc:SCO_P3-PWY |
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| 1,3,5-trimethoxybenzene biosynthesis Accession ID: PlantCyc:CSATIVA_PK_PWY-5765 |
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| 1,3,5-trimethoxybenzene biosynthesis Accession ID: PlantCyc:PLANT_PWY-5765 |
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Wu S, Watanabe N, Mita S, Ueda Y, Shibuya M, Ebizuka Y. Two O-Methyltransferases isolated from flower petals of Rosa chinensis var. spontanea involved in scent biosynthesis. Journal of Bioscience and Bioengineering. 2003 Jan;96(2):119–28. doi: 10.1016/s1389-1723(03)90113-7. |
| 1,3,5-trimethoxybenzene biosynthesis Accession ID: PlantCyc:SWEETCHERRY_PWY-5765 |
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| 1,3,5-trimethoxybenzene biosynthesis Accession ID: PlantCyc:FVESCA_VESCA_PWY-5765 |
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| 1,3,5-trimethoxybenzene biosynthesis Accession ID: PlantCyc:PPERSICA_PWY-5765 |
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| 1,3,5-trimethoxybenzene biosynthesis Accession ID: PlantCyc:MDOMESTICA_PWY-5765 |
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| 1,3,5-trimethoxybenzene biosynthesis Accession ID: PlantCyc:EUROPEANPEAR_PWY-5765 |
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| 1,3,5-trimethoxybenzene biosynthesis Accession ID: PlantCyc:ARA_PWY-5765 |
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| 1,3,5-trimethoxybenzene biosynthesis Accession ID: PlantCyc:HOP_PWY-5765 |
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| 1,3,5-trimethoxybenzene biosynthesis Accession ID: PlantCyc:RCHINENSIS_PWY-5765 |
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Wu S, Watanabe N, Mita S, Ueda Y, Shibuya M, Ebizuka Y. Two O-Methyltransferases isolated from flower petals of Rosa chinensis var. spontanea involved in scent biosynthesis. Journal of Bioscience and Bioengineering. 2003 Jan;96(2):119–28. doi: 10.1016/s1389-1723(03)90113-7. |
| 1,3,5-trimethoxybenzene biosynthesis Accession ID: PlantCyc:RMULTIFLORA_PWY-5765 |
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