Pathways Knowlegdes
Necessitatibus eius consequatur ex aliquid fuga eum quidem sint consectetur velit
| Pathway | DOIs | Note |
|---|---|---|
| succinate to cytochrome bo oxidase electron transfer Accession ID: BioCyc:META_PWY0-1329 |
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| glycerol-3-phosphate to cytochrome bo oxidase electron transfer Accession ID: BioCyc:META_PWY0-1561 |
|
Schryvers A, Lohmeier E, Weiner JH. Chemical and functional properties of the native and reconstituted forms of the membrane-bound, aerobic glycerol-3-phosphate dehydrogenase of Escherichia coli. Journal of Biological Chemistry. 1978 Feb;253(3):783–8. doi: 10.1016/s0021-9258(17)38171-1.; Freedberg WB, Lin ECC. Three Kinds of Controls Affecting the Expression of the glp Regulon in Escherichia coli. J Bacteriol. 1973 Sep;115(3):816–23. doi: 10.1128/jb.115.3.816-823.1973. |
| NADH to cytochrome bo oxidase electron transfer I Accession ID: BioCyc:META_PWY0-1335 |
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| nitrogen fixation I (ferredoxin) Accession ID: BioCyc:META_N2FIX-PWY |
|
Eady RR, Smith BE, Cook KA, Postgate JR. Nitrogenase of Klebsiella pneumoniae. Purification and properties of the component proteins. Biochem J. 1972 Jul;128(3):655–75. PMID: 4344006; PMCID: PMC1173817.; Vandecasteele J, Burris RH. Purification and Properties of the Constituents of the Nitrogenase Complex from Clostridium pasteurianum. J Bacteriol. 1970 Mar;101(3):794–801. doi: 10.1128/jb.101.3.794-801.1970. |
| superpathway of L-citrulline metabolism Accession ID: BioCyc:META_PWY-5004 |
- | |
| nitric oxide biosynthesis III (bacteria) Accession ID: BioCyc:META_PWY-7860 |
|
Adak S, Aulak KS, Stuehr DJ. Direct Evidence for Nitric Oxide Production by a Nitric-oxide Synthase-like Protein from Bacillus subtilis. Journal of Biological Chemistry. 2002 May;277(18):16167–71. doi: 10.1074/jbc.m201136200. |
| nitrifier denitrification Accession ID: BioCyc:META_PWY-7084 |
|
Poth M, Focht DD. 15 N Kinetic Analysis of N 2 O Production by Nitrosomonas europaea : an Examination of Nitrifier Denitrification. Appl Environ Microbiol. 1985 May;49(5):1134–41. doi: 10.1128/aem.49.5.1134-1141.1985.; Ritchie GA, Nicholas DJ. Identification of the sources of nitrous oxide produced by oxidative and reductive processes in Nitrosomonas europaea. Biochem J. 1972 Mar;126(5):1181–91. PMID: 5073730; PMCID: PMC1178541. |
| ammonia oxidation II (anaerobic) Accession ID: BioCyc:META_P303-PWY |
|
Kartal B, Maalcke WJ, de Almeida NM, Cirpus I, Gloerich J, Geerts W, Op den Camp HJM, Harhangi HR, Janssen-Megens EM, Francoijs K, Stunnenberg HG, Keltjens JT, Jetten MSM, Strous M. Molecular mechanism of anaerobic ammonium oxidation. Nature. 2011 Oct 02;479(7371):127–30. doi: 10.1038/nature10453.; Strous M, Pelletier E, Mangenot S, Rattei T, Lehner A, Taylor MW, Horn M, Daims H, Bartol-Mavel D, Wincker P, Barbe V, Fonknechten N, Vallenet D, Segurens B, Schenowitz-Truong C, Médigue C, Collingro A, Snel B, Dutilh BE, Op den Camp HJ, van der Drift C, Cirpus I, van de Pas-Schoonen KT, Harhangi HR, van Niftrik L, Schmid M, Keltjens J, van de Vossenberg J, Kartal B, Meier H, Frishman D, Huynen MA, Mewes HW, Weissenbach J, Jetten MS, Wagner M, Le Paslier D. Deciphering the evolution and metabolism of an anammox bacterium from a community genome. Nature. 2006 Apr 06;440(7085):790–4. doi: 10.1038/nature04647. PMID: 16598256.; van de Graaf AA, Mulder A, de Bruijn P, Jetten MS, Robertson LA, Kuenen JG. Anaerobic oxidation of ammonium is a biologically mediated process. Appl Environ Microbiol. 1995 Apr;61(4):1246–51. doi: 10.1128/aem.61.4.1246-1251.1995. |
| nitrate reduction I (denitrification) Accession ID: BioCyc:META_DENITRIFICATION-PWY |
|
Knowles R. Denitrification. Microbiol Rev. 1982 Mar;46(1):43–70. doi: 10.1128/mr.46.1.43-70.1982.; Delwiche CC, Bryan BA. Denitrification. Annu Rev Microbiol. 1976;30():241–62. doi: 10.1146/annurev.mi.30.100176.001325. PMID: 10827. |
| L-citrulline-nitric oxide cycle Accession ID: BioCyc:ARA_PWY-4983 |
|
Tischner R, Galli M, Heimer YM, Bielefeld S, Okamoto M, Mack A, Crawford NM. Interference with the citrulline-based nitric oxide synthase assay by argininosuccinate lyase activity in Arabidopsis extracts. The FEBS Journal. 2007 Jul 25;274(16):4238–45. doi: 10.1111/j.1742-4658.2007.05950.x.; Mori M. Regulation of nitric oxide synthesis and apoptosis by arginase and arginine recycling. J Nutr. 2007 Jun;137(6 Suppl 2):1616S–1620S. doi: 10.1093/jn/137.6.1616s. PMID: 17513437.; Zemojtel T, Fröhlich A, Palmieri MC, Kolanczyk M, Mikula I, Wyrwicz LS, Wanker EE, Mundlos S, Vingron M, Martasek P, Durner J. Plant nitric oxide synthase: a never-ending story? Trends Plant Sci. 2006 Nov;11(11):524–5; author reply 526. doi: 10.1016/j.tplants.2006.09.008. PMID: 17030145.; Wendehenne D, Durner J, Klessig DF. Nitric oxide: a new player in plant signalling and defence responses. Curr Opin Plant Biol. 2004 Aug;7(4):449–55. doi: 10.1016/j.pbi.2004.04.002. PMID: 15231269.; Guo FQ, Okamoto M, Crawford NM. Identification of a plant nitric oxide synthase gene involved in hormonal signaling. Science. 2003 Oct 03;302(5642):100–3. doi: 10.1126/science.1086770. PMID: 14526079.; Wendehenne D, Pugin A, Klessig DF, Durner J. Nitric oxide: comparative synthesis and signaling in animal and plant cells. Trends Plant Sci. 2001 Apr;6(4):177–83. doi: 10.1016/s1360-1385(01)01893-3. PMID: 11286923. |
| nitric oxide biosynthesis III (bacteria) Accession ID: BioCyc:BSUB_PWY-7860 |
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| nitric oxide biosynthesis III (bacteria) Accession ID: BioCyc:GCF_000013425_PWY-7860 |
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| citrulline-nitric oxide cycle Accession ID: BioCyc:HUMAN_PWY-4983 |
|
Nussler AK, Billiar TR, Liu ZZ, Morris SM. Coinduction of nitric oxide synthase and argininosuccinate synthetase in a murine macrophage cell line. Implications for regulation of nitric oxide production. Journal of Biological Chemistry. 1994 Jan;269(2):1257–61. doi: 10.1016/s0021-9258(17)42251-4. |
| protein S-nitrosylation and denitrosylation Accession ID: BioCyc:HUMAN_PWY-7798 |
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| NADH to cytochrome bo oxidase electron transfer II Accession ID: BioCyc:META_PWY0-1567 |
|
Unden G, Bongaerts J. Alternative respiratory pathways of Escherichia coli: energetics and transcriptional regulation in response to electron acceptors. Biochimica et Biophysica Acta (BBA) - Bioenergetics. 1997 Jul;1320(3):217–34. doi: 10.1016/s0005-2728(97)00034-0.; Tran QH, Bongaerts J, Vlad D, Unden G. Requirement for the Proton-Pumping NADH Dehydrogenase I of Escherichia Coli in Respiration of NADH to Fumarate and Its Bioenergetic Implications. European Journal of Biochemistry. 1997 Feb;244(1):155–60. doi: 10.1111/j.1432-1033.1997.00155.x.; Calhoun MW, Oden KL, Gennis RB, de Mattos MJ, Neijssel OM. Energetic efficiency of Escherichia coli: effects of mutations in components of the aerobic respiratory chain. J Bacteriol. 1993 May;175(10):3020–5. doi: 10.1128/jb.175.10.3020-3025.1993.; Ingledew WJ, Poole RK. The respiratory chains of Escherichia coli. Microbiol Rev. 1984 Sep;48(3):222–71. doi: 10.1128/mr.48.3.222-271.1984. |
| succinate to cytochrome bd oxidase electron transfer Accession ID: BioCyc:META_PWY0-1353 |
- | |
| NADH to cytochrome bd oxidase electron transfer I Accession ID: BioCyc:META_PWY0-1334 |
- | |
| pyruvate to cytochrome bo oxidase electron transfer Accession ID: BioCyc:META_PWY-7544 |
|
Carter K, Gennis RB. Reconstitution of the Ubiquinone-dependent pyruvate oxidase system of Escherichia coli with the cytochrome o terminal oxidase complex. Journal of Biological Chemistry. 1985 Sep;260(20):10986–90. doi: 10.1016/s0021-9258(17)39135-4. |
| nitric oxide biosynthesis I (plants) Accession ID: BioCyc:META_PWY-6845 |
|
Zhao MG, Tian QY, Zhang WH. Nitric oxide synthase-dependent nitric oxide production is associated with salt tolerance in Arabidopsis. Plant Physiol. 2007 May;144(1):206–17. PMID: 17351048; PMCID: PMC1913813. |
| glycerol-3-phosphate to cytochrome bo oxidase electron transfer Accession ID: BioCyc:ECO_PWY0-1561 |
|
Schryvers A, Lohmeier E, Weiner JH. Chemical and functional properties of the native and reconstituted forms of the membrane-bound, aerobic glycerol-3-phosphate dehydrogenase of Escherichia coli. Journal of Biological Chemistry. 1978 Feb;253(3):783–8. doi: 10.1016/s0021-9258(17)38171-1.; Freedberg WB, Lin ECC. Three Kinds of Controls Affecting the Expression of the glp Regulon in Escherichia coli. J Bacteriol. 1973 Sep;115(3):816–23. doi: 10.1128/jb.115.3.816-823.1973. |