Pathways Knowlegdes

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Pathway DOIs Note
lotaustralin degradation

Accession ID: BioCyc:META_PWY-6002
  • 10.1104/pp.107.109512
 Morant AV, Bjarnholt N, Kragh ME, Kjaergaard CH, Jørgensen K, Paquette SM, Piotrowski M, Imberty A, Olsen CE, Møller BL, Bak S. The beta-glucosidases responsible for bioactivation of hydroxynitrile glucosides in Lotus japonicus. Plant Physiol. 2008 Jul;147(3):1072–91. PMID: 18467457; PMCID: PMC2442532.
detoxification of reactive carbonyls in chloroplasts

Accession ID: BioCyc:ARA_PWY-6786
  • 10.1016/j.jmb.2009.07.023
  • 10.1074/jbc.m110.202226
 Yamauchi Y, Hasegawa A, Taninaka A, Mizutani M, Sugimoto Y. NADPH-dependent Reductases Involved in the Detoxification of Reactive Carbonyls in Plants. Journal of Biological Chemistry. 2011 Mar;286(9):6999–7009. doi: 10.1074/jbc.m110.202226.; Simpson PJ, Tantitadapitak C, Reed AM, Mather OC, Bunce CM, White SA, Ride JP. Characterization of two novel aldo-keto reductases from Arabidopsis: expression patterns, broad substrate specificity, and an open active-site structure suggest a role in toxicant metabolism following stress. J Mol Biol. 2009 Sep 18;392(2):465–80. doi: 10.1016/j.jmb.2009.07.023. PMID: 19616008.
superpathway of Clostridium acetobutylicum acidogenic and solventogenic fermentation

Accession ID: BioCyc:META_PWY-6604
  • 10.1016/s0021-9258(18)65732-1
  • 10.1016/s0021-9258(18)71290-8
  • 10.1016/s0021-9258(18)71291-x
  • 10.1096/fasebj.9.9.7601336
 Thorpe C, Kim JP. Structure and mechanism of action of the Acyl-CoA dehydrogenases 1. The FASEB Journal. 1995 Jun;9(9):718–25. doi: 10.1096/fasebj.9.9.7601336.; Hauge JG, Crane FL, Beinert H. ON THE MECHANISM OF DEHYDROGENATION OF FATTY ACYL DERIVATIVES OF COENZYME A. Journal of Biological Chemistry. 1956 Apr;219(2):727–33. doi: 10.1016/s0021-9258(18)65732-1.; Green DE, Mii S, Mahler HR, Bock RM. STUDIES ON THE FATTY ACID OXIDIZING SYSTEM OF ANIMAL TISSUES. Journal of Biological Chemistry. 1954 Jan;206(1):1–12. doi: 10.1016/s0021-9258(18)71290-8.; MAHLER HR. Studies on the fatty acid oxidizing system of animal tissues. IV. The prosthetic group of butyryl coenzyme A dehydrogenase. J Biol Chem. 1954 Jan;206(1):13–26. PMID: 13130522.
pyruvate fermentation to acetone

Accession ID: BioCyc:META_PWY-6588
  • 10.1128/mmbr.50.4.484-524.1986
 Jones DT, Woods DR. Acetone-butanol fermentation revisited. Microbiol Rev. 1986 Dec;50(4):484–524. doi: 10.1128/mr.50.4.484-524.1986.
superpathway of Clostridium acetobutylicum solventogenic fermentation

Accession ID: BioCyc:META_PWY-6594
  • 10.1016/s0021-9258(18)65732-1
  • 10.1016/s0021-9258(18)71290-8
  • 10.1016/s0021-9258(18)71291-x
  • 10.1096/fasebj.9.9.7601336
  • 10.1128/mmbr.50.4.484-524.1986
 Thorpe C, Kim JP. Structure and mechanism of action of the Acyl-CoA dehydrogenases 1. The FASEB Journal. 1995 Jun;9(9):718–25. doi: 10.1096/fasebj.9.9.7601336.; Jones DT, Woods DR. Acetone-butanol fermentation revisited. Microbiol Rev. 1986 Dec;50(4):484–524. doi: 10.1128/mr.50.4.484-524.1986.; Hauge JG, Crane FL, Beinert H. ON THE MECHANISM OF DEHYDROGENATION OF FATTY ACYL DERIVATIVES OF COENZYME A. Journal of Biological Chemistry. 1956 Apr;219(2):727–33. doi: 10.1016/s0021-9258(18)65732-1.; Green DE, Mii S, Mahler HR, Bock RM. STUDIES ON THE FATTY ACID OXIDIZING SYSTEM OF ANIMAL TISSUES. Journal of Biological Chemistry. 1954 Jan;206(1):1–12. doi: 10.1016/s0021-9258(18)71290-8.; MAHLER HR. Studies on the fatty acid oxidizing system of animal tissues. IV. The prosthetic group of butyryl coenzyme A dehydrogenase. J Biol Chem. 1954 Jan;206(1):13–26. PMID: 13130522.
detoxification of reactive carbonyls in chloroplasts

Accession ID: BioCyc:META_PWY-6786
  • 10.1016/j.jmb.2009.07.023
  • 10.1074/jbc.m110.202226
 Yamauchi Y, Hasegawa A, Taninaka A, Mizutani M, Sugimoto Y. NADPH-dependent Reductases Involved in the Detoxification of Reactive Carbonyls in Plants. Journal of Biological Chemistry. 2011 Mar;286(9):6999–7009. doi: 10.1074/jbc.m110.202226.; Simpson PJ, Tantitadapitak C, Reed AM, Mather OC, Bunce CM, White SA, Ride JP. Characterization of two novel aldo-keto reductases from Arabidopsis: expression patterns, broad substrate specificity, and an open active-site structure suggest a role in toxicant metabolism following stress. J Mol Biol. 2009 Sep 18;392(2):465–80. doi: 10.1016/j.jmb.2009.07.023. PMID: 19616008.
lotaustralin degradation

Accession ID: BioCyc:THAPS_PWY-6002		 -
neolinustatin bioactivation

Accession ID: BioCyc:META_PWY-7092
  • 10.1016/0003-9861(85)90513-2
  • 10.1016/s0031-9422(97)00425-1
  • 10.1104/pp.83.3.557
  • 10.1104/pp.86.3.711
  • 10.1146/annurev-arplant-042110-103854
 Mithöfer A, Boland W. Plant defense against herbivores: chemical aspects. Annu Rev Plant Biol. 2012;63():431–50. doi: 10.1146/annurev-arplant-042110-103854. PMID: 22404468.; Jones DA. Why are so many food plants cyanogenic? Phytochemistry. 1998 Jan;47(2):155–62. doi: 10.1016/s0031-9422(97)00425-1. PMID: 9431670.; Selmar D, Lieberei R, Biehl B. Mobilization and utilization of cyanogenic glycosides: the linustatin pathway. Plant Physiol. 1988 Mar;86(3):711–6. PMID: 16665975; PMCID: PMC1054557.; Selmar D, Lieberei R, Biehl B, Voigt J. Hevea Linamarase-A Nonspecific beta-Glycosidase. Plant Physiol. 1987 Mar;83(3):557–63. PMID: 16665288; PMCID: PMC1056404.; Fan TW-, Conn EE. Isolation and characterization of two cyanogenic ß-glucosidases from flax seeds. Archives of Biochemistry and Biophysics. 1985 Dec;243(2):361–73. doi: 10.1016/0003-9861(85)90513-2.
detoxification of reactive carbonyls in chloroplasts

Accession ID: PlantCyc:ARA_PWY-6786
  • 10.1016/j.jmb.2009.07.023
  • 10.1074/jbc.m110.202226
 Yamauchi Y, Hasegawa A, Taninaka A, Mizutani M, Sugimoto Y. NADPH-dependent Reductases Involved in the Detoxification of Reactive Carbonyls in Plants. Journal of Biological Chemistry. 2011 Mar;286(9):6999–7009. doi: 10.1074/jbc.m110.202226.; Simpson PJ, Tantitadapitak C, Reed AM, Mather OC, Bunce CM, White SA, Ride JP. Characterization of two novel aldo-keto reductases from Arabidopsis: expression patterns, broad substrate specificity, and an open active-site structure suggest a role in toxicant metabolism following stress. J Mol Biol. 2009 Sep 18;392(2):465–80. doi: 10.1016/j.jmb.2009.07.023. PMID: 19616008.
detoxification of reactive carbonyls in chloroplasts

Accession ID: PlantCyc:WHEATA_PWY-6786		 -
detoxification of reactive carbonyls in chloroplasts

Accession ID: PlantCyc:WHEATD_PWY-6786		 -
detoxification of reactive carbonyls in chloroplasts

Accession ID: PlantCyc:CACUMINATA_PWY-6786		 -
lotaustralin degradation

Accession ID: PlantCyc:CASTORBEAN_PWY-6002		 -
detoxification of reactive carbonyls in chloroplasts

Accession ID: PlantCyc:CCAPSULARIS_PWY-6786		 -
neolinustatin bioactivation

Accession ID: PlantCyc:RUBBERTREE_PWY-7092
  • 10.1016/0003-9861(85)90513-2
  • 10.1016/s0031-9422(97)00425-1
  • 10.1104/pp.83.3.557
  • 10.1104/pp.86.3.711
  • 10.1146/annurev-arplant-042110-103854
 Mithöfer A, Boland W. Plant defense against herbivores: chemical aspects. Annu Rev Plant Biol. 2012;63():431–50. doi: 10.1146/annurev-arplant-042110-103854. PMID: 22404468.; Jones DA. Why are so many food plants cyanogenic? Phytochemistry. 1998 Jan;47(2):155–62. doi: 10.1016/s0031-9422(97)00425-1. PMID: 9431670.; Selmar D, Lieberei R, Biehl B. Mobilization and utilization of cyanogenic glycosides: the linustatin pathway. Plant Physiol. 1988 Mar;86(3):711–6. PMID: 16665975; PMCID: PMC1054557.; Selmar D, Lieberei R, Biehl B, Voigt J. Hevea Linamarase-A Nonspecific beta-Glycosidase. Plant Physiol. 1987 Mar;83(3):557–63. PMID: 16665288; PMCID: PMC1056404.; Fan TW-, Conn EE. Isolation and characterization of two cyanogenic ß-glucosidases from flax seeds. Archives of Biochemistry and Biophysics. 1985 Dec;243(2):361–73. doi: 10.1016/0003-9861(85)90513-2.
detoxification of reactive carbonyls in chloroplasts

Accession ID: PlantCyc:CHINESECABBAGE_PWY-6786		 -
detoxification of reactive carbonyls in chloroplasts

Accession ID: PlantCyc:SPIDERFLOWER_PWY-6786		 -
detoxification of reactive carbonyls in chloroplasts

Accession ID: PlantCyc:CLEMENTINE_PWY-6786		 -
detoxification of reactive carbonyls in chloroplasts

Accession ID: PlantCyc:SWEETCHERRY_PWY-6786		 -
lotaustralin degradation

Accession ID: PlantCyc:COMMONBEAN_PWY-6002		 -