Pathways Knowlegdes

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Pathway DOIs Note
tRNA charging pathway

Accession ID: BioCyc:LEISH_TRNA-CHARGING-PWY		 -
leucine degradation I

Accession ID: BioCyc:LEISH_LEU-DEG2-PWY
  • 10.1016/j.pt.2007.02.004
 Opperdoes FR, Coombs GH. Metabolism of Leishmania: proven and predicted. Trends Parasitol. 2007 Apr;23(4):149–58. doi: 10.1016/j.pt.2007.02.004. PMID: 17320480.
leucine degradation I

Accession ID: BioCyc:TRYPANO_LEU-DEG2-PWY		 -
superpathway of sterol biosynthesis

Accession ID: BioCyc:LEISH_PWY3IU-93
  • 10.1046/j.1432-1327.2000.01261.x
  • 10.1074/jbc.m006850200
 Ginger ML, Chance ML, Sadler IH, Goad LJ. The Biosynthetic Incorporation of the Intact Leucine Skeleton into Sterol by the Trypanosomatid Leishmania mexicana. Journal of Biological Chemistry. 2001 Apr;276(15):11674–82. doi: 10.1074/jbc.m006850200.; Ginger ML, Prescott MC, Reynolds DG, Chance ML, Goad LJ. Utilization of leucine and acetate as carbon sources for sterol and fatty acid biosynthesis by Old and New World Leishmania species, Endotrypanum monterogeii and Trypanosoma cruzi. European Journal of Biochemistry. 2000 May;267(9):2555–66. doi: 10.1046/j.1432-1327.2000.01261.x.
tRNA Charging

Accession ID: PathBank:SMP0000820		 -
tRNA Charging 2

Accession ID: PathBank:SMP0000824		 -
Leucine Biosynthesis

Accession ID: PathBank:SMP0000831		 -
Secondary Metabolites: Valine and L-Leucine Biosynthesis from Pyruvate

Accession ID: PathBank:SMP0000994		 -
Secondary Metabolites: Leucine Biosynthesis

Accession ID: PathBank:SMP0000996		 -
Operon: Glycine Cleavage System III

Accession ID: PathBank:SMP0002216		 -
Operon: Lysine Decarboxylase III

Accession ID: PathBank:SMP0002263		 -
Disorders in ketone body synthesis

Accession ID: WikiPathways:WP5175		 -
Biochemical pathways: part I

Accession ID: WikiPathways:WP3604
  • 10.1016/s0303-2647(98)00019-7
 Michal G. On representation of metabolic pathways. Biosystems. 1998 Jun;47(1-2):1–7. doi: 10.1016/s0303-2647(98)00019-7. PMID: 9715748.
mRNA, protein, and metabolite inducation pathway by cyclosporin A

Accession ID: WikiPathways:WP3953
  • 10.1016/j.jprot.2012.11.022
 Wilmes A, Limonciel A, Aschauer L, Moenks K, Bielow C, Leonard MO, Hamon J, Carpi D, Ruzek S, Handler A, Schmal O, Herrgen K, Bellwon P, Burek C, Truisi GL, Hewitt P, Di Consiglio E, Testai E, Blaauboer BJ, Guillou C, Huber CG, Lukas A, Pfaller W, Mueller SO, Bois FY, Dekant W, Jennings P. Application of integrated transcriptomic, proteomic and metabolomic profiling for the delineation of mechanisms of drug induced cell stress. J Proteomics. 2013 Feb 21;79():180–94. doi: 10.1016/j.jprot.2012.11.022. PMID: 23238060.
AtMetExpress overview

Accession ID: WikiPathways:WP3622
  • 10.1039/c4np00072b
 Sumner LW, Lei Z, Nikolau BJ, Saito K. Modern plant metabolomics: advanced natural product gene discoveries, improved technologies, and future prospects. Nat Prod Rep. 2015 Feb;32(2):212–29. doi: 10.1039/c4np00072b. PMID: 25342293.
Glucosinolate biosynthesis from branched-chain amino acid

Accession ID: WikiPathways:WP4599
  • 10.1199/tab.0134
 Wittstock U, Burow M. Glucosinolate breakdown in Arabidopsis: mechanism, regulation and biological significance. Arabidopsis Book. 2010;8():e0134. PMID: 22303260; PMCID: PMC3244901.
Leucine, isoleucine and valine metabolism

Accession ID: WikiPathways:WP4686		 -
Amino acid metabolism

Accession ID: WikiPathways:WP662		 -
Valine, leucine and isoleucine degradation

Accession ID: WikiPathways:WP1451		 -
Amino acid metabolism

Accession ID: WikiPathways:WP3925		 -