Pathways Knowlegdes

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Pathway DOIs Note
purine deoxyribonucleosides degradation

Accession ID: BioCyc:HUMAN_PWY-7179-1
  • 10.1046/j.1432-1033.2002.03097.x
 Stoychev G, Kierdaszuk B, Shugar D. Xanthosine and xanthine. Substrate properties with purine nucleoside phosphorylases, and relevance to other enzyme systems. Eur J Biochem. 2002 Aug;269(16):4048–57. doi: 10.1046/j.1432-1033.2002.03097.x. PMID: 12180982.
purine nucleotides degradation I (plants)

Accession ID: BioCyc:META_PWY-5044
  • 10.1074/jbc.m312929200
  • 10.1104/pp.115.4.1307
 Hesberg C, Hänsch R, Mendel RR, Bittner F. Tandem orientation of duplicated xanthine dehydrogenase genes from Arabidopsis thaliana: differential gene expression and enzyme activities. J Biol Chem. 2004 Apr 02;279(14):13547–54. doi: 10.1074/jbc.m312929200. PMID: 14726515.; Capote-Maínez N, Sánchez F. Characterization of the common bean uricase II and its expression in organs other than nodules. Plant Physiol. 1997 Dec;115(4):1307–17. PMID: 9414545; PMCID: PMC158596.
purine deoxyribonucleosides degradation I

Accession ID: BioCyc:META_PWY-7179		 -
purine nucleobases degradation II (anaerobic)

Accession ID: BioCyc:META_PWY-5497
  • 10.1128/br.40.2.403-468.1976
 Vogels GD, Van der Drift C. Degradation of purines and pyrimidines by microorganisms. Bacteriol Rev. 1976 Jun;40(2):403–68. doi: 10.1128/br.40.2.403-468.1976.
guanine and guanosine salvage

Accession ID: BioCyc:META_PWY-6620
  • 10.1016/s0021-9258(18)32201-4
  • 10.1016/s0021-9258(19)83606-2
  • 10.1021/bi9616007
  • 10.1111/j.1432-1033.1971.tb01345.x
 Xu Y, Eads J, Sacchettini JC, Grubmeyer C. Kinetic mechanism of human hypoxanthine-guanine phosphoribosyltransferase: rapid phosphoribosyl transfer chemistry. Biochemistry. 1997 Mar 25;36(12):3700–12. doi: 10.1021/bi9616007. PMID: 9132023.; Liu SW, Milman G. Purification and characterization of Escherichia coli guanine-xanthine phosphoribosyltransferase produced by a high efficiency expression plasmid utilizing a lambda PL promoter and CI857 temperature-sensitive repressor. Journal of Biological Chemistry. 1983 Jun;258(12):7469–75. doi: 10.1016/s0021-9258(18)32201-4.; Lewis AS, Lowy BA. Human erythrocyte purine nucleoside phosphorylase: molecular weight and physical properties. A Theorell-Chance catalytic mechanism. Journal of Biological Chemistry. 1979 Oct;254(19):9927–32. doi: 10.1016/s0021-9258(19)83606-2.; Hammer-Jespersen K, Munch-Petersen A, Nygaard P, Schwartz M. Induction of Enzymes Involved in the Catabolism of Deoxyribonucleosides and Ribonucleosides in Escherichia coli K 12. European Journal of Biochemistry. 1971 Apr;19(4):533–8. doi: 10.1111/j.1432-1033.1971.tb01345.x.
superpathway of purine nucleotide salvage

Accession ID: BioCyc:META_PWY66-409
  • 10.1016/s0021-9258(19)83606-2
  • 10.1016/s0163-7258(00)00097-8
  • 10.1073/pnas.93.3.1232
 Bzowska A, Kulikowska E, Shugar D. Purine nucleoside phosphorylases: properties, functions, and clinical aspects. Pharmacol Ther. 2000 Dec;88(3):349–425. doi: 10.1016/s0163-7258(00)00097-8. PMID: 11337031.; Spychala J, Datta NS, Takabayashi K, Datta M, Fox IH, Gribbin T, Mitchell BS. Cloning of human adenosine kinase cDNA: sequence similarity to microbial ribokinases and fructokinases. Proc. Natl. Acad. Sci. U.S.A. 1996 Feb 06;93(3):1232–7. doi: 10.1073/pnas.93.3.1232.; Lewis AS, Lowy BA. Human erythrocyte purine nucleoside phosphorylase: molecular weight and physical properties. A Theorell-Chance catalytic mechanism. Journal of Biological Chemistry. 1979 Oct;254(19):9927–32. doi: 10.1016/s0021-9258(19)83606-2.
archaeosine biosynthesis II

Accession ID: BioCyc:META_PWY-7923
  • 10.1074/jbc.m002174200
  • 10.3390/biom7020036
 Bon Ramos A, Bao L, Turner B, de Crécy-Lagard V, Iwata-Reuyl D. QueF-Like, a Non-Homologous Archaeosine Synthase from the Crenarchaeota. Biomolecules. 2017 Apr 06;7(2). PMID: 28383498; PMCID: PMC5485725.; Bai Y, Fox DT, Lacy JA, Van Lanen SG, Iwata-Reuyl D. Hypermodification of tRNA in Thermophilic archaea. Cloning, overexpression, and characterization of tRNA-guanine transglycosylase from Methanococcus jannaschii. J Biol Chem. 2000 Sep 15;275(37):28731–8. doi: 10.1074/jbc.m002174200. PMID: 10862614.
purine deoxyribonucleosides degradation I

Accession ID: BioCyc:ECO_PWY-7179		 -
queuosine biosynthesis

Accession ID: BioCyc:VCHO_PWY-6700		 -
purine deoxyribonucleosides degradation I

Accession ID: BioCyc:VCHO_PWY-7179		 -
guanine and guanosine salvage

Accession ID: BioCyc:VCHO_PWY-6620		 -
purine ribonucleosides degradation

Accession ID: BioCyc:SHIGELLA_PWY0-1296		 -
queuosine biosynthesis

Accession ID: BioCyc:SHIGELLA_PWY-6700		 -
superpathway of guanine and guanosine salvage

Accession ID: BioCyc:SHIGELLA_PWY-6579		 -
purine and pyrimidine metabolism

Accession ID: BioCyc:PLASMO_P1-PWY		 -
guanine and guanosine salvage

Accession ID: BioCyc:MTBCDC1551_PWY-6620		 -
guanine and guanosine salvage

Accession ID: BioCyc:HPY_PWY-6620		 -
purine ribonucleosides degradation

Accession ID: BioCyc:ECOO157_PWY0-1296		 -
purine deoxyribonucleosides degradation

Accession ID: BioCyc:ECOO157_PWY-7179		 -
superpathway of guanine and guanosine salvage

Accession ID: BioCyc:ECOO157_PWY-6579		 -