Pathways Knowlegdes

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Pathway DOIs Note
O-antigen building blocks biosynthesis (E. coli)

Accession ID: BioCyc:BTHE_OANTIGEN-PWY		 -
N-acetylglucosamine degradation I

Accession ID: BioCyc:EREC_GLUAMCAT-PWY		 -
anhydromuropeptides recycling

Accession ID: BioCyc:CLOSTSYMB_PWY0-1261		 -
N-acetylglucosamine degradation I

Accession ID: BioCyc:FAECPRAU_GLUAMCAT-PWY		 -
O-antigen building blocks biosynthesis (E. coli)

Accession ID: BioCyc:PRECOPRI_OANTIGEN-PWY		 -
UDP-N-acetyl-D-glucosamine biosynthesis I

Accession ID: BioCyc:GCF_000013425_UDPNAGSYN-PWY		 -
N-acetylglucosamine degradation I

Accession ID: BioCyc:GCF_000013425_GLUAMCAT-PWY		 -
UDP-N-acetyl-D-glucosamine biosynthesis II

Accession ID: BioCyc:HUMAN_UDPNACETYLGALSYN-PWY
  • 10.1002/yea.1337
 Milewski S, Gabriel I, Olchowy J. Enzymes of UDP-GlcNAc biosynthesis in yeast. Yeast. 2006 Jan 15;23(1):1–14. doi: 10.1002/yea.1337. PMID: 16408321.
CMP-legionaminate biosynthesis I

Accession ID: BioCyc:META_PWY-6749
  • 10.1021/bi702364s
  • 10.1093/glycob/cwp039
 Schoenhofen IC, Vinogradov E, Whitfield DM, Brisson JR, Logan SM. The CMP-legionaminic acid pathway in Campylobacter: biosynthesis involving novel GDP-linked precursors. Glycobiology. 2009 Jul;19(7):715–25. doi: 10.1093/glycob/cwp039. PMID: 19282391.; Glaze PA, Watson DC, Young NM, Tanner ME. Biosynthesis of CMP-N,N'-Diacetyllegionaminic Acid from UDP-N,N'-Diacetylbacillosamine in Legionella pneumophila. Biochemistry. 2008 Feb 15;47(10):3272–82. doi: 10.1021/bi702364s.
ammonia assimilation cycle III

Accession ID: BioCyc:META_AMMASSIM-PWY		 -
N-acetylglucosamine degradation I

Accession ID: BioCyc:META_GLUAMCAT-PWY		 -
O-antigen building blocks biosynthesis (E. coli)

Accession ID: BioCyc:META_OANTIGEN-PWY		 -
anhydromuropeptides recycling I

Accession ID: BioCyc:META_PWY0-1261
  • 10.1111/j.1749-6632.2012.06813.x
  • 10.1128/mmbr.00027-07
 Johnson JW, Fisher JF, Mobashery S. Bacterial cell-wall recycling. Annals of the New York Academy of Sciences. 2012 Nov 16;1277(1):54–75. doi: 10.1111/j.1749-6632.2012.06813.x.; Park JT, Uehara T. How bacteria consume their own exoskeletons (turnover and recycling of cell wall peptidoglycan). Microbiol Mol Biol Rev. 2008 Jun;72(2):211–27, table of contents. PMID: 18535144; PMCID: PMC2415748.
UDP-N-acetyl-D-glucosamine biosynthesis II

Accession ID: BioCyc:META_UDPNACETYLGALSYN-PWY
  • 10.1002/yea.1337
 Milewski S, Gabriel I, Olchowy J. Enzymes of UDP-GlcNAc biosynthesis in yeast. Yeast. 2006 Jan 15;23(1):1–14. doi: 10.1002/yea.1337. PMID: 16408321.
UDP-N-acetyl-D-glucosamine biosynthesis I

Accession ID: BioCyc:META_UDPNAGSYN-PWY		 -
UDP-N-acetyl-D-galactosamine biosynthesis III

Accession ID: BioCyc:META_PWY-8013
  • 10.1128/jb.00048-18
 Dadashipour M, Iwamoto M, Hossain MM, Akutsu JI, Zhang Z, Kawarabayasi Y. Identification of a Direct Biosynthetic Pathway for UDP-N-Acetylgalactosamine from Glucosamine-6-Phosphate in Thermophilic Crenarchaeon Sulfolobus tokodaii. J Bacteriol. 2018 May 15;200(10). PMID: 29507091; PMCID: PMC5915783.
N-acetylglucosamine degradation I

Accession ID: BioCyc:ECO_GLUAMCAT-PWY		 -
UDP-N-acetyl-D-glucosamine biosynthesis I

Accession ID: BioCyc:VCHO_UDPNAGSYN-PWY		 -
superpathway of mycolyl-arabinogalactan-peptidoglycan complex biosynthesis

Accession ID: BioCyc:MTBH37RV_PWY-6404		 -
O-antigen building blocks biosynthesis (E. coli)

Accession ID: BioCyc:MTBCDC1551_OANTIGEN-PWY		 -