Pathways Knowlegdes

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Pathway DOIs Note
superpathway of histidine, purine, and pyrimidine biosynthesis

Accession ID: BioCyc:TRYPANO_PRPP-PWY		 -
uridine-5'-phosphate biosynthesis

Accession ID: BioCyc:LEISH_PWY-5686		 -
superpathway of arginine and polyamine biosynthesis

Accession ID: BioCyc:TRYPANO_ARG+POLYAMINE-SYN		 -
uridine-5'-phosphate biosynthesis

Accession ID: BioCyc:TRYPANO_PWY-5686		 -
urea cycle

Accession ID: BioCyc:LEISH_PWY-4984		 -
arginine biosynthesis I

Accession ID: BioCyc:TRYPANO_ARGSYN-PWY		 -
pyrimidine ribonucleotides de novo biosynthesis

Accession ID: BioCyc:LEISH_PWY0-162
  • 10.1016/j.molbiopara.2006.02.010
 Opperdoes FR, Szikora J. In silico prediction of the glycosomal enzymes of Leishmania major and trypanosomes. Molecular and Biochemical Parasitology. 2006 Jun;147(2):193–206. doi: 10.1016/j.molbiopara.2006.02.010.
pyrimidine ribonucleotides de novo biosynthesis

Accession ID: BioCyc:TRYPANO_PWY0-162		 -
Arginine Metabolism

Accession ID: PathBank:SMP0000812		 -
Pyrimidine Metabolism

Accession ID: PathBank:SMP0000959		 -
Allantoin Degradation (Anaerobic)

Accession ID: PathBank:SMP0002064		 -
Metabolism and regulation

Accession ID: Plant Reactome:R-OAU-2744345		 -
Amino acid metabolism

Accession ID: Plant Reactome:R-OAU-2744343		 -
Canavanine biosynthesis

Accession ID: Plant Reactome:R-OAU-1119444		 -
Proline biosynthesis V (from arginine)

Accession ID: Plant Reactome:R-OAU-1119318		 -
Arginine biosynthesis I

Accession ID: Plant Reactome:R-TAE-1119263
  • 10.1016/j.plaphy.2005.06.007
  • 10.1111/tpj.12476
  • 10.4161/psb.28717
 Xia J, Yamaji N, Ma JF. An appropriate concentration of arginine is required for normal root growth in rice. Plant Signaling & Behavior. 2014 Apr;9(4):e28717. doi: 10.4161/psb.28717.; Xia J, Yamaji N, Che J, Shen RF, Ma JF. Normal root elongation requires arginine produced by argininosuccinate lyase in rice. Plant J. 2014 Apr;78(2):215–26. doi: 10.1111/tpj.12476. PMID: 24528386.; Slocum RD. Genes, enzymes and regulation of arginine biosynthesis in plants. Plant Physiol Biochem. 2005 Aug;43(8):729–45. doi: 10.1016/j.plaphy.2005.06.007. PMID: 16122935.
Amino acid biosynthesis

Accession ID: Plant Reactome:R-FVE-5655122		 -
Citrulline biosynthesis

Accession ID: Plant Reactome:R-FVE-1119495		 -
Proline biosynthesis V (from arginine)

Accession ID: Plant Reactome:R-FVE-1119318		 -
Metabolism and regulation

Accession ID: Plant Reactome:R-MES-2744345		 -