Pathways Knowlegdes
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| Pathway | DOIs | Note |
|---|---|---|
| 4-aminophenol degradation Accession ID: BioCyc:META_PWY-7081 |
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Takenaka S, Okugawa S, Kadowaki M, Murakami S, Aoki K. The Metabolic Pathway of 4-Aminophenol in Burkholderia sp. Strain AK-5 Differs from That of Aniline and Aniline with C-4 Substituents. Appl Environ Microbiol. 2003 Sep;69(9):5410–3. doi: 10.1128/aem.69.9.5410-5413.2003. |
| γ-resorcylate degradation II Accession ID: BioCyc:META_PWY-7772 |
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Kasai D, Araki N, Motoi K, Yoshikawa S, Iino T, Imai S, Masai E, Fukuda M. ?-Resorcylate catabolic-pathway genes in the soil actinomycete Rhodococcus jostii RHA1. Appl Environ Microbiol. 2015 Nov;81(21):7656–65. PMID: 26319878; PMCID: PMC4592853. |
| γ-resorcylate degradation I Accession ID: BioCyc:META_PWY-7773 |
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Yoshida M, Oikawa T, Obata H, Abe K, Mihara H, Esaki N. Biochemical and genetic analysis of the gamma-resorcylate (2,6-dihydroxybenzoate) catabolic pathway in Rhizobium sp. strain MTP-10005: identification and functional analysis of its gene cluster. J Bacteriol. 2007 Mar;189(5):1573–81. PMID: 17158677; PMCID: PMC1855702.; Chapman PJ, Ribbons DW. Metabolism of resorcinylic compounds by bacteria: alternative pathways for resorcinol catabolism in Pseudomonas putida. J Bacteriol. 1976 Mar;125(3):985–98. doi: 10.1128/jb.125.3.985-998.1976. |
| 4-nitrophenol degradation II Accession ID: BioCyc:META_PWY-5488 |
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Kadiyala V, Spain JC. A Two-Component Monooxygenase Catalyzes Both the Hydroxylation of p -Nitrophenol and the Oxidative Release of Nitrite from 4-Nitrocatechol in Bacillus sphaericus JS905. Appl Environ Microbiol. 1998 Jul;64(7):2479–84. doi: 10.1128/aem.64.7.2479-2484.1998.; Jain RK, Dreisbach JH, Spain JC. Biodegradation of p-nitrophenol via 1,2,4-benzenetriol by an Arthrobacter sp. Appl Environ Microbiol. 1994 Aug;60(8):3030–2. doi: 10.1128/aem.60.8.3030-3032.1994. |
| resorcinol degradation Accession ID: BioCyc:CORYNE_P343-PWY |
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Huang Y, Zhao KX, Shen XH, Chaudhry MT, Jiang CY, Liu SJ. Genetic characterization of the resorcinol catabolic pathway in Corynebacterium glutamicum. Appl Environ Microbiol. 2006 Nov;72(11):7238–45. PMID: 16963551; PMCID: PMC1636210. |
| resorcinol degradation Accession ID: BioCyc:META_P343-PWY |
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Huang Y, Zhao KX, Shen XH, Chaudhry MT, Jiang CY, Liu SJ. Genetic characterization of the resorcinol catabolic pathway in Corynebacterium glutamicum. Appl Environ Microbiol. 2006 Nov;72(11):7238–45. PMID: 16963551; PMCID: PMC1636210. |
| 2,4,5-trichlorophenoxyacetate degradation Accession ID: BioCyc:META_PWY-6200 |
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Gisi MR, Xun L. Characterization of Chlorophenol 4-Monooxygenase (TftD) and NADH:Flavin Adenine Dinucleotide Oxidoreductase (TftC) of Burkholderia cepacia AC1100. J Bacteriol. 2003 May;185(9):2786–92. doi: 10.1128/jb.185.9.2786-2792.2003.; Zaborina O, Daubaras DL, Zago A, Xun L, Saido K, Klem T, Nikolic D, Chakrabarty AM. Novel Pathway for Conversion of Chlorohydroxyquinol to Maleylacetate in Burkholderia cepacia AC1100. J Bacteriol. 1998 Sep;180(17):4667–75. doi: 10.1128/jb.180.17.4667-4675.1998.; Xun L. Purification and characterization of chlorophenol 4-monooxygenase from Burkholderia cepacia AC1100. J Bacteriol. 1996 May;178(9):2645–9. doi: 10.1128/jb.178.9.2645-2649.1996.; Xun L, Wagnon KB. Purification and Properties of Component B of 2,4,5-Trichlorophenoxyacetate Oxygenase from Pseudomonas cepacia AC1100. Appl Environ Microbiol. 1995 Sep;61(9):3499–502. doi: 10.1128/aem.61.9.3499-3502.1995. |
| alkylnitronates degradation Accession ID: BioCyc:META_PWY-723 |
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Gorlatova N, Tchorzewski M, Kurihara T, Soda K, Esaki N. Purification, Characterization, and Mechanism of a Flavin Mononucleotide-Dependent 2-Nitropropane Dioxygenase from Neurospora crassa. Appl Environ Microbiol. 1998 Mar;64(3):1029–33. doi: 10.1128/aem.64.3.1029-1033.1998.; Colandene JD, Garrett RH. Functional Dissection and Site-directed Mutagenesis of the Structural Gene for NAD(P)H-Nitrite Reductase in Neurospora crassa. Journal of Biological Chemistry. 1996 Sep;271(39):24096–104. doi: 10.1074/jbc.271.39.24096.; Exley GE, Colandene JD, Garrett RH. Molecular cloning, characterization, and nucleotide sequence of nit-6, the structural gene for nitrite reductase in Neurospora crassa. J Bacteriol. 1993 Apr;175(8):2379–92. doi: 10.1128/jb.175.8.2379-2392.1993.; Prodouz KN, Garrett RH. Neurospora crassa NAD(P)H-nitrite reductase. Studies on its composition and structure. Journal of Biological Chemistry. 1981 Sep;256(18):9711–7. doi: 10.1016/s0021-9258(19)68821-6.; Greenbaum P, Prodouz KN, Garrett RH. Preparation and some properties of homogeneous Neurospora crassa assimilatory NADPH-nitrite reductase. Biochimica et Biophysica Acta (BBA) - Enzymology. 1978 Sep;526(1):52–64. doi: 10.1016/0005-2744(78)90289-9.; Kido T, Soda K, Suzuki T, Asada K. A new oxygenase, 2-nitropropane dioxygenase of Hansenula mrakii. Enzymologic and spectrophotometric properties. Journal of Biological Chemistry. 1976 Nov;251(22):6994–7000. doi: 10.1016/s0021-9258(17)32932-0.; Kido T, Yamamoto T, Soda K. Microbial assimilation of alkyl nitro compounds and formation of nitrite. Arch Microbiol. 1975 Dec 31;106(3):165–9. doi: 10.1007/bf00446519. PMID: 1217935.; Vega J, Garrett R. Siroheme: a prosthetic group of the Neurospora crassa assimilatory nitrite reductase. Journal of Biological Chemistry. 1975 Oct;250(20):7980–9. doi: 10.1016/s0021-9258(19)40804-1.; Lafferty MA, Garrett RH. Purification and Properties of the Neurospora crassa Assimilatory Nitrite Reductase. Journal of Biological Chemistry. 1974 Dec;249(23):7555–67. doi: 10.1016/s0021-9258(19)81274-7.; Prakash O, Sadana JC. Purification, characterization and properties of nitrite reductase of Achromobacter fischeri. Archives of Biochemistry and Biophysics. 1972 Feb;148(2):614–32. doi: 10.1016/0003-9861(72)90181-6.; Pateman JA, Rever BM, Cove DJ. Genetic and biochemical studies of nitrate reduction in Aspergillus nidulans. Biochem J. 1967 Jul;104(1):103–11. PMID: 4382427; PMCID: PMC1270550. |
| resorcinol degradation Accession ID: BioCyc:PCHR_P343-PWY |
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| superpathway of aromatic compound degradation Accession ID: BioCyc:CORYNE_PWY18HP-1 |
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Shen XH, Zhou NY, Liu SJ. Degradation and assimilation of aromatic compounds by Corynebacterium glutamicum: another potential for applications for this bacterium? Appl Microbiol Biotechnol. 2012 Jul;95(1):77–89. doi: 10.1007/s00253-012-4139-4. PMID: 22588501. |