Pathways Knowlegdes

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Pathway DOIs Note
preQ0 biosynthesis

Accession ID: BioCyc:ECO_PWY-6703		 -
2-hydroxypenta-2,4-dienoate degradation

Accession ID: BioCyc:ECO_PWY-5162
  • 10.1128/mmbr.65.4.523-569.2001
 Díaz E, Ferrández A, Prieto MA, García JL. Biodegradation of aromatic compounds by Escherichia coli. Microbiol Mol Biol Rev. 2001 Dec;65(4):523–69, table of contents. PMID: 11729263; PMCID: PMC99040.
homofuraneol biosynthesis

Accession ID: BioCyc:YEAST_PWY-7910		 -
threonine degradation

Accession ID: BioCyc:YEAST_PWY-5436		 -
acetoin biosynthesis III

Accession ID: BioCyc:YEAST_PWY3O-440
  • 10.1021/bi00311a002
  • 10.1128/aem.62.2.309-315.1996
  • 10.1128/jb.172.2.678-685.1990
 Romano P, Suzzi G. Origin and Production of Acetoin during Wine Yeast Fermentation. Appl Environ Microbiol. 1996 Feb;62(2):309–15. doi: 10.1128/aem.62.2.309-315.1996.; Seeboth PG, Bohnsack K, Hollenberg CP. pdc1(0) mutants of Saccharomyces cerevisiae give evidence for an additional structural PDC gene: cloning of PDC5, a gene homologous to PDC1. J Bacteriol. 1990 Feb;172(2):678–85. doi: 10.1128/jb.172.2.678-685.1990.; Chen GC, Jordan F. Brewers' yeast pyruvate decarboxylase produces acetoin from acetaldehyde: a novel tool to study the mechanism of steps subsequent to carbon dioxide loss. Biochemistry. 1984 Jul 31;23(16):3576–82. doi: 10.1021/bi00311a002. PMID: 6383467.
superpathway of acetoin and butanediol biosynthesis

Accession ID: BioCyc:YEAST_PWY3O-981
  • 10.1021/bi00311a002
  • 10.1074/jbc.m003035200
  • 10.1111/j.1432-1033.1990.tb15384.x
  • 10.1128/aem.62.2.309-315.1996
  • 10.1128/jb.172.2.678-685.1990
 González E, Fernández MR, Larroy C, Solà L, Pericàs MA, Parés X, Biosca JA. Characterization of a (2R,3R)-2,3-butanediol dehydrogenase as the Saccharomyces cerevisiae YAL060W gene product. Disruption and induction of the gene. J Biol Chem. 2000 Nov 17;275(46):35876–85. doi: 10.1074/jbc.m003035200. PMID: 10938079.; Romano P, Suzzi G. Origin and Production of Acetoin during Wine Yeast Fermentation. Appl Environ Microbiol. 1996 Feb;62(2):309–15. doi: 10.1128/aem.62.2.309-315.1996.; HEIDLAS J, TRESSL R. Purification and properties of two oxidoreductases catalyzing the enantioselective reduction of diacetyl and other diketones from baker's yeast. European Journal of Biochemistry. 1990 Feb;188(1):165–74. doi: 10.1111/j.1432-1033.1990.tb15384.x.; Seeboth PG, Bohnsack K, Hollenberg CP. pdc1(0) mutants of Saccharomyces cerevisiae give evidence for an additional structural PDC gene: cloning of PDC5, a gene homologous to PDC1. J Bacteriol. 1990 Feb;172(2):678–85. doi: 10.1128/jb.172.2.678-685.1990.; Chen GC, Jordan F. Brewers' yeast pyruvate decarboxylase produces acetoin from acetaldehyde: a novel tool to study the mechanism of steps subsequent to carbon dioxide loss. Biochemistry. 1984 Jul 31;23(16):3576–82. doi: 10.1021/bi00311a002. PMID: 6383467.
chitin degradation to ethanol

Accession ID: BioCyc:YEAST_PWY-7118		 -
ethanol degradation I

Accession ID: BioCyc:ARA_ETOH-ACETYLCOA-ANA-PWY
  • 10.1046/j.1365-313x.2002.01293.x
  • 10.1104/pp.103.022244
 Ismond KP, Dolferus R, de Pauw M, Dennis ES, Good AG. Enhanced low oxygen survival in Arabidopsis through increased metabolic flux in the fermentative pathway. Plant Physiol. 2003 Jul;132(3):1292–302. PMID: 12857811; PMCID: PMC167069.; Mellema S, Eichenberger W, Rawyler A, Suter M, Tadege M, Kuhlemeier C. The ethanolic fermentation pathway supports respiration and lipid biosynthesis in tobacco pollen. Plant J. 2002 May;30(3):329–36. doi: 10.1046/j.1365-313x.2002.01293.x. PMID: 12000680.
threonine degradation IV

Accession ID: BioCyc:TRYPANO_PWY-5436		 -
sucrose degradation to ethanol and lactate (anaerobic)

Accession ID: BioCyc:TRYPANO_PWY-3801		 -
2'-deoxy-α-D-ribose 1-phosphate degradation

Accession ID: BioCyc:VCHO_PWY-7180		 -
2'-deoxy-α-D-ribose 1-phosphate degradation

Accession ID: BioCyc:SHIGELLA_PWY-7180		 -
pyruvate fermentation to ethanol I

Accession ID: BioCyc:SHIGELLA_PWY-5480		 -
superpathway of pyrimidine deoxyribonucleosides degradation

Accession ID: BioCyc:SHIGELLA_PWY0-1298		 -
hexitol fermentation to lactate, formate, ethanol and acetate

Accession ID: BioCyc:SHIGELLA_P461-PWY		 -
ethanol degradation I

Accession ID: BioCyc:MTBH37RV_ETOH-ACETYLCOA-ANA-PWY		 -
ethanol degradation II

Accession ID: BioCyc:MTBH37RV_PWY66-21		 -
2'-deoxy-α-D-ribose 1-phosphate degradation

Accession ID: BioCyc:MTBH37RV_PWY-7180		 -
ethanol degradation I

Accession ID: BioCyc:MTBCDC1551_ETOH-ACETYLCOA-ANA-PWY		 -
superpathway of pyrimidine deoxyribonucleosides degradation

Accession ID: BioCyc:MTBCDC1551_PWY0-1298		 -