Pathways Knowlegdes

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Pathway DOIs Note
superpathway of central carbon metabolism

Accession ID: BioCyc:LEISH_PWY3IU-99
  • 10.1073/pnas.0603539103
 Sernee MF, Ralton JE, Dinev Z, Khairallah GN, O’Hair RA, Williams SJ, McConville MJ. Leishmania ß-1,2-mannan is assembled on a mannose-cyclic phosphate primer. Proc. Natl. Acad. Sci. U.S.A. 2006 Jun 20;103(25):9458–63. doi: 10.1073/pnas.0603539103.
glycolysis I

Accession ID: BioCyc:LEISH_GLYCOLYSIS
  • 10.1016/j.bbamcr.2006.08.019
 Michels PAM, Bringaud F, Herman M, Hannaert V. Metabolic functions of glycosomes in trypanosomatids. Biochimica et Biophysica Acta (BBA) - Molecular Cell Research. 2006 Dec;1763(12):1463–77. doi: 10.1016/j.bbamcr.2006.08.019.
gluconeogenesis I

Accession ID: BioCyc:LEISH_GLUCONEO-PWY
  • 10.1073/pnas.0509196103
  • 10.1074/jbc.m603265200
 Rodríguez-Contreras D, Landfear SM. Metabolic Changes in Glucose Transporter-deficient Leishmania mexicana and Parasite Virulence. Journal of Biological Chemistry. 2006 Jul;281(29):20068–76. doi: 10.1074/jbc.m603265200.; Naderer T, Ellis MA, Sernee MF, De Souza DP, Curtis J, Handman E, McConville MJ. Virulence of Leishmania major in macrophages and mice requires the gluconeogenic enzyme fructose-1,6-bisphosphatase. Proc. Natl. Acad. Sci. U.S.A. 2006 Apr 04;103(14):5502–7. doi: 10.1073/pnas.0509196103.
sucrose degradation to ethanol and lactate (anaerobic)

Accession ID: BioCyc:TRYPANO_PWY-3801		 -
superpathway of glycolysis, pyruvate dehydrogenase, TCA, and glyoxylate bypass

Accession ID: BioCyc:TRYPANO_GLYCOLYSIS-TCA-GLYOX-BYPASS		 -
superpathway of glycolysis, pyruvate dehydrogenase and TCA cycle

Accession ID: BioCyc:LEISH_PWY3IU-61		 -
superpathway of glycolysis and Entner-Doudoroff

Accession ID: BioCyc:TRYPANO_GLYCOLYSIS-E-D		 -
glycolysis II

Accession ID: BioCyc:TRYPANO_PWY-5484		 -
heterolactic fermentation

Accession ID: BioCyc:TRYPANO_P122-PWY		 -
gluconeogenesis I

Accession ID: BioCyc:TRYPANO_GLUCONEO-PWY		 -
gluconeogenesis

Accession ID: BioCyc:CALBI_GLUCONEO-PWY
  • 10.1099/00221287-144-1-13
 Klein CJL, Olsson L, Nielsen J. Glucose control in Saccharomyces cerevisiae: the role of Mig1 in metabolic functions. Microbiology (Reading). 1998 Jan;144 ( Pt 1)():13–24. doi: 10.1099/00221287-144-1-13. PMID: 9467897.
Bifidobacterium shunt

Accession ID: BioCyc:TRYPANO_P124-PWY		 -
glycolysis I

Accession ID: BioCyc:TRYPANO_GLYCOLYSIS		 -
formaldehyde assimilation III (dihydroxyacetone cycle)

Accession ID: BioCyc:TRYPANO_P185-PWY		 -
glycolysis III

Accession ID: BioCyc:TRYPANO_ANAGLYCOLYSIS-PWY		 -
glycolysis

Accession ID: BioCyc:CALBI_GLYCOLYSIS
  • 10.1007/bf00442632
  • 10.1016/j.bbrc.2006.07.066
  • 10.1016/s0378-1097(00)00311-6
  • 10.1080/02681219480000611
  • 10.1086/432104
  • 10.1128/mmbr.62.2.334-361.1998
 Watanabe T, Ogasawara A, Mikami T, Matsumoto T. Hyphal formation of Candida albicans is controlled by electron transfer system. Biochemical and Biophysical Research Communications. 2006 Sep;348(1):206–11. doi: 10.1016/j.bbrc.2006.07.066.; Andes D, Lepak A, Pitula A, Marchillo K, Clark J. A simple approach for estimating gene expression in Candida albicans directly from a systemic infection site. J Infect Dis. 2005 Sep 01;192(5):893–900. doi: 10.1086/432104. PMID: 16088840.; Saeed FA. Production of pyruvate by Candida albicans: proposed role in virulence. FEMS Microbiol Lett. 2000 Sep 01;190(1):35–8. doi: 10.1111/j.1574-6968.2000.tb09258.x. PMID: 10981686.; Gancedo JM. Yeast Carbon Catabolite Repression. Microbiol Mol Biol Rev. 1998 Jun;62(2):334–61. doi: 10.1128/mmbr.62.2.334-361.1998.; Cho T, Hagihara Y, Kaminishi H, Watanabe K. The relationship between the glucose uptake system and growth cessation in Candida albicans. J Med Vet Mycol. 1994 Dec;32(6):461–6. doi: 10.1080/02681219480000611. PMID: 7738728.; Schwartz DS, Larsh HW. Comparative activities of glycolytic enzymes in yeast and mycelial forms of Candida albicans. Mycopathologia. 1982 May 22;78(2):93–8. doi: 10.1007/bf00442632. PMID: 6212766.
Metabolism and regulation

Accession ID: Plant Reactome:R-OAU-2744345		 -
Carbohydrate metabolism

Accession ID: Plant Reactome:R-OAU-2883407		 -
Calvin cycle

Accession ID: Plant Reactome:R-OAU-1119519		 -
glycolysis I

Accession ID: Plant Reactome:R-CME-1119424
  • 10.1016/j.pbi.2004.03.007
  • 10.1146/annurev.arplant.47.1.185
 Fernie AR, Carrari F, Sweetlove LJ. Respiratory metabolism: glycolysis, the TCA cycle and mitochondrial electron transport. Curr Opin Plant Biol. 2004 Jun;7(3):254–61. doi: 10.1016/j.pbi.2004.03.007. PMID: 15134745.; Plaxton WC. THE ORGANIZATION AND REGULATION OF PLANT GLYCOLYSIS. Annu Rev Plant Physiol Plant Mol Biol. 1996 Jun;47():185–214. doi: 10.1146/annurev.arplant.47.1.185. PMID: 15012287.