Metabolite Card

Formula: C5H4N2O4 (156.0171)
SMILES: OC(=O)C1=CC(=O)NC(=O)N1

Synonyms [en]

Orotic acid; orotate; Uracil-6-carboxylic acid; Orotsaeure; Orodin; Vitamin B13

Reviewed

Last reviewed on 2024-06-28.

Cite this Page

Orotate. 数据之源,洞见之始. SMRUCC genomics institute, a synthetic life researcher from China. https://biocad_registry.innovation.ac.cn/s/(-)-arctiin (retrieved 2026-01-03) (CAD Registry RN: BioCAD00000015624). Licensed under the Attribution-Noncommercial 4.0 International License (CC BY-NC 4.0).

Note

Orotic acid is classified as a pyrimidinemonocarboxylic acid. That is it is a uracil bearing a carboxy substituent at position C-6. It is also classified as a pyrimidinedione and a carboxylic acid. Orotic acid is a minor dietary constituent. Indeed, until it was realized that it could be synthesized by humans, orotic acid was known as vitamin B-13. The richest dietary sources of orotic acid are cow's milk and other dairy products as well as root vegetables such as carrots and beets. Dietary intake probably contributes to a basal rate of orotic acid excretion in urine because fasting decreases excretion by ~50%. However, it is now apparent that most urinary orotic acid is synthesized in the body, where it arises as an intermediate in the pathway for the synthesis of pyrimidine nucleotides. Orotic acid is converted to UMP by UMP synthase, a multifunctional protein with both orotate phosphoribosyltransferase and orotidylate decarboxylase activity. The most frequently observed inborn error of pyrimidine nucleotide synthesis is a mutation of the multifunctional protein UMP synthase (UMP synthase deficiency or orotic aciduria). This disorder prevents the conversion of orotic acid to UMP, and thus to other pyrimidines. As a result, plasma orotic acid accumulates to high concentrations, and increased quantities appear in the urine. Indeed, urinary orotic acid is so markedly increased in individuals harboring a mutation in UMP synthase that orotic acid crystals can form in the urine. The urinary concentration of orotic acid in individuals suffering from orotic aciduria can be of the order of millimoles of orotic acid per millimole creatinine. By comparison, the urinary level in unaffected individuals is ~ 1 ¬umol/mmol creatinine (PMID: 17513443). Orotic aciduria is characterized by megaloblastic anemia and orotic acid crystalluria that is frequently associated with some degree of physical and mental retardation. These features respond to appropriate pyrimidine replacement therapy and most cases appear to have a good prognosis. When present in sufficiently high levels, orotic acid can act as an acidogen and a metabotoxin. An acidogen is an acidic compound that induces acidosis, which has multiple adverse effects on many organ systems. A metabotoxin is an endogenously produced metabolite that causes adverse health effects at chronically high levels. Chronically high levels of orotic acid are associated with at least seven inborn errors of metabolism, including argininemia, LPI syndrome (lysinuric protein intolerance), hyperornithinemia-hyperammonemia-homocitrullinuria (HHH), OTC deficiency, citrullinemia type I, purine nucleoside phosphorylase deficiency, and orotic aciduria. Orotic acid is broadly classified as an organic acid. Abnormally high levels of organic acids in the blood (organic acidemia), urine (organic aciduria), the brain, and other tissues lead to general metabolic acidosis. Acidosis typically occurs when arterial pH falls below 7.35. In infants with acidosis, the initial symptoms include poor feeding, vomiting, loss of appetite, weak muscle tone (hypotonia), and lack of energy (lethargy). These can progress to heart abnormalities, seizures, coma, and possibly death. These are also the characteristic symptoms of the untreated IEMs mentioned above. Many affected children with organic acidemias experience intellectual disability or delayed development. In adults, acidosis or acidemia is characterized by headaches, confusion, feeling tired, tremors, sleepiness, and seizures.

Entity Information

DBLinks

Other DBLinks
  • CAS Registry Number: 15184-25-5
  • CAS Registry Number: 50887-69-9
  • CAS Registry Number: 61791-00-2
  • CAS Registry Number: 65-86-1
  • PubChem: 967
  • ChEBI: ChEBI:16742
  • HMDB: HMDB0000226
  • KEGG: C00295
  • KEGG: C00295 D00055
  • BioCyc: OROTATE
  • NCBI MeSH: Orotic Acid
  • Wikipedia: Orotic acid
  • Wikipedia: Orotic_acid
  • DrugBank: DB02262
  • RefMet: RM0033030
  • MoNA: BAF_UVA_POS001450
  • MoNA: BAF_UVA_POS001451
  • MoNA: Bruker_HCD_library000401
  • MoNA: CCMSLIB00000578119
  • MoNA: CCMSLIB00005464280
  • MoNA: CCMSLIB00005464294
  • MoNA: CCMSLIB00005464295
  • MoNA: CCMSLIB00005720333
  • MoNA: EMBL-MCF_spec17874
  • MoNA: EMBL-MCF_spec50548
  • MoNA: EMBL_MCF_2_0_HRMS_Library000353
  • MoNA: FiehnHILIC001417
  • MoNA: FiehnHILIC002900
  • MoNA: FiehnLib000821
  • MoNA: HMDB0000226_c_ms_1412
  • MoNA: HMDB0000226_ms_ms_373
  • MoNA: HMDB0000226_ms_ms_374
  • MoNA: HMDB0000226_ms_ms_375
  • MoNA: MoNA002204
  • MoNA: MoNA002206
  • MoNA: MoNA002208
  • MoNA: MoNA016776
  • MoNA: MoNA024115
  • MoNA: MoNA031868
  • MoNA: MoNA031869
  • MoNA: MoNA031870
  • MoNA: MoNA032133
  • MoNA: MoNA032134
  • MoNA: MoNA032135
  • MoNA: MoNA034081
  • MoNA: MoNA034082
  • MoNA: MoNA034084
  • MoNA: MoNA034885
  • MoNA: MoNA034886
  • MoNA: MoNA034887
  • MoNA: MoNA034957
  • MoNA: MoNA034959
  • MoNA: MoNA034960
  • MoNA: MoNA035709
  • MoNA: MoNA035710
  • MoNA: MoNA035711
  • MoNA: MoNA037034
  • MoNA: MoNA037078
  • MoNA: MoNA037177
  • MoNA: MoNA037686
  • MoNA: MoNA037732
  • MoNA: MoNA037771
  • MoNA: MoNA037893
  • MoNA: MoNA038421
  • MoNA: MoNA_0001892
  • MoNA: MoNA_0001893
  • MoNA: MoNA_0001894
  • MoNA: OUF00404
  • MoNA: PM000987
  • MoNA: PR100186
  • MoNA: PR100595
  • MoNA: PS031707
  • MoNA: PS031708
  • MoNA: VF-NPL-LTQ007473
  • MoNA: VF-NPL-LTQ007474
  • MoNA: VF-NPL-QEHF025837
  • MoNA: VF-NPL-QEHF025838
  • MoNA: VF-NPL-QEHF025839
  • MoNA: VF-NPL-QEHF025840
  • MoNA: VF-NPL-QEHF025841
  • MoNA: VF-NPL-QEHF025842
  • MoNA: VF-NPL-QEHF025843
  • MoNA: VF-NPL-QEHF025844
  • MoNA: VF-NPL-QEHF025845
  • MoNA: VF-NPL-QEHF025846
  • MoNA: VF-NPL-QEHF025847
  • MoNA: VF-NPL-QEHF025848
  • MoNA: VF-NPL-QEHF025849
  • MoNA: VF-NPL-QEHF025850
  • MoNA: VF-NPL-QEHF025851
  • MoNA: VF-NPL-QTOF009179
  • MoNA: VF-NPL-QTOF009180
  • MoNA: VF-NPL-QTOF009181
  • Metlin: METLIN_318
  • Coconut NaturalProduct: CNP0176375.1
  • Coconut NaturalProduct: CNP0403686.0
  • Coconut NaturalProduct: CNP0569904.0

Class / Ontology

Metabolic Network
ID EC Number Name
KEGG:R01866 1.3.1.15 (S)-dihydroorotate:NADP+ oxidoreductase
KEGG:R01867 1.3.98.1 (S)-dihydroorotate:fumarate oxidoreductase
KEGG:R01868 1.3.5.2 (S)-dihydroorotate:quinone oxidoreductase
KEGG:R01869 1.3.1.14 (S)-dihydroorotate:NAD+ oxidoreductase
KEGG:R01870 2.4.2.10 orotidine-5'-phosphate:diphosphate phospho-alpha-D-ribosyl-transferase
BioCyc:OROTATE-REDUCTASE-NADH-RXN 1.3.1.14 DI-H-OROTATE + NAD --> PROTON + OROTATE + NADH
BioCyc:OROPRIBTRANS-RXN 2.4.2.10 PRPP + OROTATE --> OROTIDINE-5-PHOSPHATE + PPI
BioCyc:RXN0-6490 OROTATE + 2 PROTON + 2 E- --> DI-H-OROTATE
BioCyc:DIHYDROOROTATE-DEHYDROGENASE-RXN 1.3.5.2 ETR-Quinones + DI-H-OROTATE --> ETR-Quinols + OROTATE
BioCyc:TRANS-RXN-121C orotate:proton symport
BioCyc:RXN0-6491 1.3.5.2 dihydroorotate dehydrogenase
BioCyc:RXN0-6554 1.3.5.2 DI-H-OROTATE + Menaquinones --> OROTATE + Menaquinols
BioCyc:RXN-9929 1.3.98.1 DI-H-OROTATE + FUM --> OROTATE + SUC
BioCyc:OROTATE-REDUCTASE-NADPH-RXN 1.3.1.15 DI-H-OROTATE + NADP<=>PROTON + OROTATE + NADPH
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Organism Source

Taxonomy Source

  1. Escherichia coli [ncbi taxid: 562]
  2. Arabidopsis thaliana [ncbi taxid: 3702]
  3. Bos taurus domesticus [ncbi taxid: ]
  4. Citrullus lanatus [ncbi taxid: 3654]
  5. Escherichia coli [ncbi taxid: 562]
  6. Homo sapiens [ncbi taxid: 9606]
  7. Nardostachys jatamansi [ncbi taxid: 179860]
  8. Saccharomyces cerevisiae [ncbi taxid: 4932]
  9. Bos taurus [ncbi taxid: 9913]
  10. Bubalus bubalis [ncbi taxid: 89462]
  11. Escherichia coli [ncbi taxid: 562]
  12. Homo sapiens [ncbi taxid: 9606]
  13. Mus musculus [ncbi taxid: 10090]

Pathway Synthetic

pathway id name
PathBank:SMP0000959 Pyrimidine Metabolism
WikiPathways:WP3604 Biochemical pathways: part I
WikiPathways:WP4583 Biomarkers for urea cycle disorders
WikiPathways:WP4022 Pyrimidine metabolism
PathBank:SMP0120678 beta-Ureidopropionase Deficiency
PathBank:SMP0120750 MNGIE (Mitochondrial Neurogastrointestinal Encephalopathy)
PathBank:SMP0121324 Pyrimidine Metabolism
PathBank:SMP0000178 Dihydropyrimidinase Deficiency
PathBank:SMP0120693 Dihydropyrimidinase Deficiency
PathBank:SMP0120507 UMP Synthase Deficiency (Orotic Aciduria)
PathBank:SMP0000046 Pyrimidine Metabolism
PathBank:SMP0000219 UMP Synthase Deficiency (Orotic Aciduria)
PathBank:SMP0087401 Pyrimidine Metabolism
PathBank:SMP0087473 Pyrimidine Metabolism
PathBank:SMP0120473 Dihydropyrimidinase Deficiency
PathBank:SMP0000202 MNGIE (Mitochondrial Neurogastrointestinal Encephalopathy)
PathBank:SMP0002370 Pyrimidine Metabolism
PathBank:SMP0087340 Pyrimidine Metabolism
PathBank:SMP0063658 Pyrimidine Metabolism
PathBank:SMP0120727 UMP Synthase Deficiency (Orotic Aciduria)
View All Pathways