D-Glycerate (BioCAD00000009369)
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Metabolite Card
Formula: C3H6O4 (106.0266)
SMILES: OC[C@@H](O)C(O)=O
Synonyms [en]
D-Glyceric acid; Glyceric acid; Glycerate; R-glyceric acid; alpha,beta-Hydroxypropionic acid; (R)-Glycerate
Last reviewed on 2024-06-28.
Cite this Page
D-Glycerate. 数据之源,洞见之始. SMRUCC genomics institute, a synthetic life researcher from China.
https://biocad_registry.innovation.ac.cn/s/(-)-arctiin
(retrieved
2026-01-03) (CAD Registry RN: BioCAD00000009369). Licensed
under the Attribution-Noncommercial 4.0 International License (CC BY-NC 4.0).
Note
Glyceric acid is a colourless syrupy acid, obtained from oxidation of glycerol. It is a compound that is secreted excessively in the urine by patients suffering from D-glyceric aciduria, an inborn error of metabolism, and D-glycerate anemia. Deficiency of human glycerate kinase leads to D-glycerate acidemia/D-glyceric aciduria. Symptoms of the disease include progressive neurological impairment, hypotonia, seizures, failure to thrive, and metabolic acidosis. At sufficiently high levels, glyceric acid can act as an acidogen and a metabotoxin. An acidogen is an acidic compound that induces acidosis, which has multiple adverse effects on many organ systems. A metabotoxin is an endogenously produced metabolite that causes adverse health effects at chronically high levels. Glyceric acid is an organic acid. Abnormally high levels of organic acids in the blood (organic acidemia), urine (organic aciduria), the brain, and other tissues lead to general metabolic acidosis. Acidosis typically occurs when arterial pH falls below 7.35. In infants with acidosis, the initial symptoms include poor feeding, vomiting, loss of appetite, weak muscle tone (hypotonia), and lack of energy (lethargy). These can progress to heart abnormalities, seizures, coma, and possibly death. These are also the characteristic symptoms of untreated glyceric aciduria. Many affected children with organic acidemias experience intellectual disability or delayed development. In adults, acidosis or acidemia is characterized by headaches, confusion, feeling tired, tremors, sleepiness, and seizures. Elevated values may also be due to microbial sources such as yeast (Aspergillus, Penicillium, probably Candida) or due to dietary sources containing glycerol (glycerine). Glyceric acid is isolated from various plants (e.g. brassicas, pulses, and Vicia faba).
DBLinks
- CAS Registry Number: 473-81-4
- PubChem CID: 439194
- ChEBI: 16659
- HMDB: HMDB0000139
- LipidMaps:
- KEGG: C00258
- BioCyc: GLYCERATE
- NCBI MeSH:
- Wikipedia: Glyceric acid
Other DBLinks
- CAS Registry Number: 14028-62-7
- CAS Registry Number: 473-81-4
- CAS Registry Number: 6000-40-4
- PubChem: 3557
- PubChem: 439194
- ChEBI: ChEBI:16659
- ChEBI: ChEBI:32398
- ChEBI: ChEBI:33508
- HMDB: HMDB0000139
- KEGG: C00258
- BioCyc: GLYCERATE
- Wikipedia: Glyceric acid
- RefMet: RM0135902
- MoNA: BAF_UVA_POS000856
- MoNA: CCMSLIB00000578118
- MoNA: CCMSLIB00000578215
- MoNA: EMBL-MCF_spec48330
- MoNA: GLS00176
- MoNA: HMDB0031818_c_ms_1050
- MoNA: HMDB0031818_ms_ms_212
- MoNA: HMDB0031818_ms_ms_213
- MoNA: HMDB0031818_ms_ms_214
- MoNA: KO000858
- MoNA: KO000859
- MoNA: KO000860
- MoNA: KO000861
- MoNA: KO000862
- MoNA: MoNA024074
- MoNA: OUF00253
- MoNA: PR100836
- MoNA: PR100897
- MoNA: PS097007
- MoNA: PS114807
- MoNA: PS118407
Class / Ontology
- WishartLab ClassyFire: [Carbohydrates and carbohydrate conjugates] Carbohydrates and carbohydrate conjugates
- RefMet: [Sugar acids] Sugar acids
- ChEBI: [CHEBI:32398] D-glyceric acid
| ID | EC Number | Name |
|---|---|---|
| KEGG:R01388 | 1.1.1.26 | D-glycerate:NAD+ 2-oxidoreductase |
| KEGG:R01392 | 1.1.1.79 | D-glycerate:NADP+ 2-oxidoreductase |
| KEGG:R01511 | 3.1.3.38 | D-glycerate-3-phosphate phosphohydrolase |
| KEGG:R01514 | 2.7.1.31 | ATP:(R)-glycerate 3-phosphotransferase |
| KEGG:R01745 | 1.1.1.60 | (R)-glycerate:NAD+ oxidoreductase |
| KEGG:R01747 | 1.1.1.60 | (R)-glycerate:NADP+ oxidoreductase |
| KEGG:R01748 | 3.1.3.20 | D-glycerate-2-phosphate phosphohydrolase |
| KEGG:R01749 | 1.1.1.92 | D-glycerate:NAD+ oxidoreductase (carboxylating) |
| KEGG:R01750 | 1.1.1.92 | D-glycerate:NADP+ oxidoreductase (carboxylating) |
| KEGG:R01751 | 4.1.1.73 | (R,R)-tartrate carboxy-lyase (D-glycerate-forming) |
| KEGG:R01752 | 1.2.1.3 | D-glyceraldehyde:NAD+ oxidoreductase |
| KEGG:R08571 | 1.2.7.5 | glyceraldehyde ferredoxin oxidoreductase |
| KEGG:R08572 | 2.7.1.165 | ATP:(R)-glycerate 2-phosphotransferase |
| KEGG:R09645 | 3.2.1.- | C16699 + C00001<=>C00275 + C00258 |
| KEGG:R09665 | 2.4.1.268 | ADP-glucose:D-glycerate 2-alpha-D-glucosyltransferase |
| KEGG:R09666 | 2.4.1.269 | GDP-mannose:D-glycerate 2-alpha-D-mannosyltransferase |
| KEGG:R10324 | 1.2.99.8 | D-glyceraldehyde:acceptor oxidoreductase (FAD-containing) |
| KEGG:R10615 | 1.2.1.89 | D-glyceraldehyde:NADP+ oxidoreductase |
| KEGG:R11959 | 2.4.1.352 | 2-O-(alpha-D-glucopyranosyl)-D-glycerate:phosphate alpha-D-glucosyltransferase (configuration-retaining) |
| KEGG:R12095 | 3.2.1.170 | 2-O-(alpha-D-mannopyranosyl)-D-glycerate D-mannohydrolase |
Taxonomy Source
Pathway Synthetic
| pathway id | name |
|---|---|
| BioCyc:TRYPANO_GLUCARDEG-PWY | D-glucarate degradation I |
| BioCyc:TRYPANO_PWY-1622 | formaldehyde assimilation I (serine pathway) |
| BioCyc:TRYPANO_GLUCARGALACTSUPER-PWY | superpathway of D-glucarate and D-galactarate degradation |
| BioCyc:TRYPANO_GALACTARDEG-PWY | D-galactarate degradation I |
| PathBank:SMP0000816 | D-Glucarate and D-Galactarate Degradation |
| PathBank:SMP0000847 | Glycolate and Glyoxylate Degradation |
| PathBank:SMP0002035 | Glycolate and Glyoxylate Degradation II |
| PathBank:SMP0002108 | 2-O-alpha-Mannosyl-D-glycerate Degradation |
| Plant Reactome:R-HVU-1119312 | PCO cycle |
| Plant Reactome:R-TAE-1119312 | PCO cycle |
| Plant Reactome:R-MES-2744345 | Metabolism and regulation |
| Plant Reactome:R-MES-1119502 | Allantoin assimilation |
| Plant Reactome:R-TDI-2744345 | Metabolism and regulation |
| Plant Reactome:R-TDI-5096066 | Amine and polyamine biosynthesis |
| Plant Reactome:R-OGU-5096066 | Amine and polyamine biosynthesis |
| Plant Reactome:R-PTI-2744345 | Metabolism and regulation |
| Plant Reactome:R-PTI-1119502 | Allantoin assimilation |
| Plant Reactome:R-PTI-1119312 | PCO cycle |
| Plant Reactome:R-GMA-2744345 | Metabolism and regulation |
| Plant Reactome:R-GMA-5096066 | Amine and polyamine biosynthesis |