D-Glycerate (BioCAD00000009369)

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Metabolite Card

Formula: C3H6O4 (106.0266)
SMILES: OC[C@@H](O)C(O)=O

Synonyms [en]

D-Glyceric acid; Glyceric acid; Glycerate; R-glyceric acid; alpha,beta-Hydroxypropionic acid; (R)-Glycerate

Reviewed

Last reviewed on 2024-06-28.

Cite this Page

D-Glycerate. 数据之源,洞见之始. SMRUCC genomics institute, a synthetic life researcher from China. https://biocad_registry.innovation.ac.cn/s/(-)-arctiin (retrieved 2026-01-03) (CAD Registry RN: BioCAD00000009369). Licensed under the Attribution-Noncommercial 4.0 International License (CC BY-NC 4.0).

Note

Glyceric acid is a colourless syrupy acid, obtained from oxidation of glycerol. It is a compound that is secreted excessively in the urine by patients suffering from D-glyceric aciduria, an inborn error of metabolism, and D-glycerate anemia. Deficiency of human glycerate kinase leads to D-glycerate acidemia/D-glyceric aciduria. Symptoms of the disease include progressive neurological impairment, hypotonia, seizures, failure to thrive, and metabolic acidosis. At sufficiently high levels, glyceric acid can act as an acidogen and a metabotoxin. An acidogen is an acidic compound that induces acidosis, which has multiple adverse effects on many organ systems. A metabotoxin is an endogenously produced metabolite that causes adverse health effects at chronically high levels. Glyceric acid is an organic acid. Abnormally high levels of organic acids in the blood (organic acidemia), urine (organic aciduria), the brain, and other tissues lead to general metabolic acidosis. Acidosis typically occurs when arterial pH falls below 7.35. In infants with acidosis, the initial symptoms include poor feeding, vomiting, loss of appetite, weak muscle tone (hypotonia), and lack of energy (lethargy). These can progress to heart abnormalities, seizures, coma, and possibly death. These are also the characteristic symptoms of untreated glyceric aciduria. Many affected children with organic acidemias experience intellectual disability or delayed development. In adults, acidosis or acidemia is characterized by headaches, confusion, feeling tired, tremors, sleepiness, and seizures. Elevated values may also be due to microbial sources such as yeast (Aspergillus, Penicillium, probably Candida) or due to dietary sources containing glycerol (glycerine). Glyceric acid is isolated from various plants (e.g. brassicas, pulses, and Vicia faba).

Entity Information

DBLinks

Other DBLinks
  • CAS Registry Number: 14028-62-7
  • CAS Registry Number: 473-81-4
  • CAS Registry Number: 6000-40-4
  • PubChem: 3557
  • PubChem: 439194
  • ChEBI: ChEBI:16659
  • ChEBI: ChEBI:32398
  • ChEBI: ChEBI:33508
  • HMDB: HMDB0000139
  • KEGG: C00258
  • BioCyc: GLYCERATE
  • Wikipedia: Glyceric acid
  • RefMet: RM0135902
  • MoNA: BAF_UVA_POS000856
  • MoNA: CCMSLIB00000578118
  • MoNA: CCMSLIB00000578215
  • MoNA: EMBL-MCF_spec48330
  • MoNA: GLS00176
  • MoNA: HMDB0031818_c_ms_1050
  • MoNA: HMDB0031818_ms_ms_212
  • MoNA: HMDB0031818_ms_ms_213
  • MoNA: HMDB0031818_ms_ms_214
  • MoNA: KO000858
  • MoNA: KO000859
  • MoNA: KO000860
  • MoNA: KO000861
  • MoNA: KO000862
  • MoNA: MoNA024074
  • MoNA: OUF00253
  • MoNA: PR100836
  • MoNA: PR100897
  • MoNA: PS097007
  • MoNA: PS114807
  • MoNA: PS118407

Class / Ontology

Metabolic Network
ID EC Number Name
KEGG:R01388 1.1.1.26 D-glycerate:NAD+ 2-oxidoreductase
KEGG:R01392 1.1.1.79 D-glycerate:NADP+ 2-oxidoreductase
KEGG:R01511 3.1.3.38 D-glycerate-3-phosphate phosphohydrolase
KEGG:R01514 2.7.1.31 ATP:(R)-glycerate 3-phosphotransferase
KEGG:R01745 1.1.1.60 (R)-glycerate:NAD+ oxidoreductase
KEGG:R01747 1.1.1.60 (R)-glycerate:NADP+ oxidoreductase
KEGG:R01748 3.1.3.20 D-glycerate-2-phosphate phosphohydrolase
KEGG:R01749 1.1.1.92 D-glycerate:NAD+ oxidoreductase (carboxylating)
KEGG:R01750 1.1.1.92 D-glycerate:NADP+ oxidoreductase (carboxylating)
KEGG:R01751 4.1.1.73 (R,R)-tartrate carboxy-lyase (D-glycerate-forming)
KEGG:R01752 1.2.1.3 D-glyceraldehyde:NAD+ oxidoreductase
KEGG:R08571 1.2.7.5 glyceraldehyde ferredoxin oxidoreductase
KEGG:R08572 2.7.1.165 ATP:(R)-glycerate 2-phosphotransferase
KEGG:R09645 3.2.1.- C16699 + C00001<=>C00275 + C00258
KEGG:R09665 2.4.1.268 ADP-glucose:D-glycerate 2-alpha-D-glucosyltransferase
KEGG:R09666 2.4.1.269 GDP-mannose:D-glycerate 2-alpha-D-mannosyltransferase
KEGG:R10324 1.2.99.8 D-glyceraldehyde:acceptor oxidoreductase (FAD-containing)
KEGG:R10615 1.2.1.89 D-glyceraldehyde:NADP+ oxidoreductase
KEGG:R11959 2.4.1.352 2-O-(alpha-D-glucopyranosyl)-D-glycerate:phosphate alpha-D-glucosyltransferase (configuration-retaining)
KEGG:R12095 3.2.1.170 2-O-(alpha-D-mannopyranosyl)-D-glycerate D-mannohydrolase
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Organism Source

Taxonomy Source

Pathway Synthetic

pathway id name
BioCyc:TRYPANO_GLUCARDEG-PWY D-glucarate degradation I
BioCyc:TRYPANO_PWY-1622 formaldehyde assimilation I (serine pathway)
BioCyc:TRYPANO_GLUCARGALACTSUPER-PWY superpathway of D-glucarate and D-galactarate degradation
BioCyc:TRYPANO_GALACTARDEG-PWY D-galactarate degradation I
PathBank:SMP0000816 D-Glucarate and D-Galactarate Degradation
PathBank:SMP0000847 Glycolate and Glyoxylate Degradation
PathBank:SMP0002035 Glycolate and Glyoxylate Degradation II
PathBank:SMP0002108 2-O-alpha-Mannosyl-D-glycerate Degradation
Plant Reactome:R-HVU-1119312 PCO cycle
Plant Reactome:R-TAE-1119312 PCO cycle
Plant Reactome:R-MES-2744345 Metabolism and regulation
Plant Reactome:R-MES-1119502 Allantoin assimilation
Plant Reactome:R-TDI-2744345 Metabolism and regulation
Plant Reactome:R-TDI-5096066 Amine and polyamine biosynthesis
Plant Reactome:R-OGU-5096066 Amine and polyamine biosynthesis
Plant Reactome:R-PTI-2744345 Metabolism and regulation
Plant Reactome:R-PTI-1119502 Allantoin assimilation
Plant Reactome:R-PTI-1119312 PCO cycle
Plant Reactome:R-GMA-2744345 Metabolism and regulation
Plant Reactome:R-GMA-5096066 Amine and polyamine biosynthesis
View All Pathways